miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 102554 0.69 0.794791
Target:  5'- cGCaCGCGGUcaGCGGCGggugGCGgGGCGCGg -3'
miRNA:   3'- uCG-GCGCUAagUGCCGU----UGC-UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 102384 0.67 0.883695
Target:  5'- cGCCugGCGGUcgGCGGCGAUGgcccccaccAGCGCGg -3'
miRNA:   3'- uCGG--CGCUAagUGCCGUUGC---------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 100704 0.66 0.915674
Target:  5'- cGCCGCcauGUUCGCGGgGcUGuGCGCGu -3'
miRNA:   3'- uCGGCGc--UAAGUGCCgUuGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 98638 0.75 0.496763
Target:  5'- uGGCCGCGAccgUCGCGGCgAACGGGgGu- -3'
miRNA:   3'- -UCGGCGCUa--AGUGCCG-UUGCUCgUgc -5'
5157 3' -55.4 NC_001798.1 + 98578 0.67 0.890553
Target:  5'- uGGCCGCGGUggCGuCGGCGGCcccGGCGg- -3'
miRNA:   3'- -UCGGCGCUAa-GU-GCCGUUGc--UCGUgc -5'
5157 3' -55.4 NC_001798.1 + 97833 0.66 0.926814
Target:  5'- -uCUGCGcccUgACGGCGggcGCGGGCACGg -3'
miRNA:   3'- ucGGCGCua-AgUGCCGU---UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 97796 0.75 0.458976
Target:  5'- cGCCGCGGUgccaacggcuUCGCGGCG-CGcGCGCGc -3'
miRNA:   3'- uCGGCGCUA----------AGUGCCGUuGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 97455 0.7 0.76701
Target:  5'- cGCCGCGugcuggCGCGGCugggggccGGCG-GCGCGa -3'
miRNA:   3'- uCGGCGCuaa---GUGCCG--------UUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 97228 0.68 0.869314
Target:  5'- uGGCCGUGGagcuggcgcugUUCG-GGCGGCGGGCGg- -3'
miRNA:   3'- -UCGGCGCU-----------AAGUgCCGUUGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 96666 0.66 0.909746
Target:  5'- gAGCgGCGc--CACGGCcGCgcugGAGCGCGu -3'
miRNA:   3'- -UCGgCGCuaaGUGCCGuUG----CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 96011 0.74 0.555857
Target:  5'- -uCCGCGAaUCACGGCAcaccggcgggGCGGGCggGCGg -3'
miRNA:   3'- ucGGCGCUaAGUGCCGU----------UGCUCG--UGC- -5'
5157 3' -55.4 NC_001798.1 + 95674 0.69 0.785666
Target:  5'- -uCgGCGGUUUggcgGCGGCGGCGGGgGCGg -3'
miRNA:   3'- ucGgCGCUAAG----UGCCGUUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 94527 0.79 0.303613
Target:  5'- gAGCCGCGuguuGUUCGCGGgcGCGAGCGCc -3'
miRNA:   3'- -UCGGCGC----UAAGUGCCguUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 90880 0.67 0.890553
Target:  5'- cGCuCGUGGagCugGGCGGCGcGCAUGc -3'
miRNA:   3'- uCG-GCGCUaaGugCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 90388 0.66 0.936996
Target:  5'- cGCCGuCGGggggCGCGGUugGGCcGGCGCGu -3'
miRNA:   3'- uCGGC-GCUaa--GUGCCG--UUGcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 89399 0.68 0.868572
Target:  5'- cGGCCGCuccccuuccccccGAggCACGGC--CGGGCGCu -3'
miRNA:   3'- -UCGGCG-------------CUaaGUGCCGuuGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 88854 0.71 0.718428
Target:  5'- cGGCCGaUGGUcgUCACGGUGGCGGcCACGu -3'
miRNA:   3'- -UCGGC-GCUA--AGUGCCGUUGCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 88682 0.67 0.890553
Target:  5'- cGGCCGUGAggcCGCGGCAcaaaACGAaaAUGg -3'
miRNA:   3'- -UCGGCGCUaa-GUGCCGU----UGCUcgUGC- -5'
5157 3' -55.4 NC_001798.1 + 88134 0.66 0.926814
Target:  5'- -cUCGCGggUCugGGCcACGAuCACGu -3'
miRNA:   3'- ucGGCGCuaAGugCCGuUGCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 87174 0.66 0.915674
Target:  5'- -cCCGCGugcagCGCgGGCGACGGGCGg- -3'
miRNA:   3'- ucGGCGCuaa--GUG-CCGUUGCUCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.