miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 86894 0.7 0.738148
Target:  5'- cGCCGgGAacCcCGGCGugGAGCGCc -3'
miRNA:   3'- uCGGCgCUaaGuGCCGUugCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 86855 0.7 0.76701
Target:  5'- cGGCCGCGAcaagaCcCGGCGGCGGucGCGCu -3'
miRNA:   3'- -UCGGCGCUaa---GuGCCGUUGCU--CGUGc -5'
5157 3' -55.4 NC_001798.1 + 86121 0.7 0.780124
Target:  5'- cGCCGCGc--CGCGGuCAGCGAGUccugggaagcgcaccGCGg -3'
miRNA:   3'- uCGGCGCuaaGUGCC-GUUGCUCG---------------UGC- -5'
5157 3' -55.4 NC_001798.1 + 84679 0.66 0.915674
Target:  5'- cGCCGCGAaccgUUCGCGcuuucgGGCGAGCAg- -3'
miRNA:   3'- uCGGCGCU----AAGUGCcg----UUGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 82174 0.72 0.667992
Target:  5'- cGGCCGCGGUUUccgccgcaGCGGCGGC-AGUGCc -3'
miRNA:   3'- -UCGGCGCUAAG--------UGCCGUUGcUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 79864 0.68 0.869314
Target:  5'- cGCCuCGAUggaCGCGGCGGcCGAGCuguACGu -3'
miRNA:   3'- uCGGcGCUAa--GUGCCGUU-GCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 79372 0.66 0.936996
Target:  5'- gGGCCgGCGGccagACGGgcGCGGGCGCGg -3'
miRNA:   3'- -UCGG-CGCUaag-UGCCguUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 79059 0.69 0.81259
Target:  5'- gGGCUGCGGgccCAgcCGGCcuACGAGCGCc -3'
miRNA:   3'- -UCGGCGCUaa-GU--GCCGu-UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 78819 0.71 0.698412
Target:  5'- cGCCGCc---CGCGGCGACGgccccggccccuGGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 78558 0.66 0.909746
Target:  5'- gGGCCuGCGGgaggCGCuGGCcgcgcGCGAGCGCc -3'
miRNA:   3'- -UCGG-CGCUaa--GUG-CCGu----UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 78392 0.77 0.388343
Target:  5'- uGGUCGCGug-CGCGGCGGCguugGAGCGCGu -3'
miRNA:   3'- -UCGGCGCuaaGUGCCGUUG----CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 77783 0.66 0.921364
Target:  5'- gAGCUGCGccgccugCA-GGCGcugGCGGGCACGc -3'
miRNA:   3'- -UCGGCGCuaa----GUgCCGU---UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 77206 0.69 0.785666
Target:  5'- cGCgGCGAcgguggaCGCGGCcguGCGGGCGCa -3'
miRNA:   3'- uCGgCGCUaa-----GUGCCGu--UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 75260 0.66 0.932024
Target:  5'- uGGCCGC----CACGGCGguccggcucGCGGcGCGCGa -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU---------UGCU-CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 72840 0.69 0.794791
Target:  5'- aGGCCGCacg-CGCGGC-ACGGGCcccgaGCGg -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGuUGCUCG-----UGC- -5'
5157 3' -55.4 NC_001798.1 + 72427 0.68 0.859505
Target:  5'- cGCCGCcuucuuugagugccGGUUCGaGaGCGACGGGCACc -3'
miRNA:   3'- uCGGCG--------------CUAAGUgC-CGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 71081 0.74 0.50643
Target:  5'- aAGCCGCGucagccCGCGGuCGGCGuGCGCGc -3'
miRNA:   3'- -UCGGCGCuaa---GUGCC-GUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 70564 0.67 0.876614
Target:  5'- gGGCUGCGcacCACGGCGGCccugGGGC-CGg -3'
miRNA:   3'- -UCGGCGCuaaGUGCCGUUG----CUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 70284 0.69 0.794791
Target:  5'- cGCCGC----CACGGCGGCGuuucuguugucgGGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGCCGUUGC------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 69949 0.72 0.667992
Target:  5'- cGCCGCGccUUCGCGGCGuacuuGCGA-CACGc -3'
miRNA:   3'- uCGGCGCu-AAGUGCCGU-----UGCUcGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.