miRNA display CGI


Results 81 - 100 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 69478 0.68 0.846156
Target:  5'- gGGCCGU----CGCGGCGagcgauggGCGGGCGCa -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU--------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 68116 0.72 0.627061
Target:  5'- gGGCCGCG---CACGGCcaagacGGCGAGgGCGg -3'
miRNA:   3'- -UCGGCGCuaaGUGCCG------UUGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 67137 0.68 0.846156
Target:  5'- cGCCGCcccuggCAUcGCGACGGGCGCa -3'
miRNA:   3'- uCGGCGcuaa--GUGcCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 66781 0.69 0.81259
Target:  5'- gGGCCGCGGaaUCGgaguCGGcCGACGcGCGCGg -3'
miRNA:   3'- -UCGGCGCUa-AGU----GCC-GUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 64731 0.66 0.915674
Target:  5'- aGGCgGCGGUg---GGC-AUGAGCGCGa -3'
miRNA:   3'- -UCGgCGCUAagugCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 60844 0.66 0.926814
Target:  5'- cGuCCGCucg-CGCGGCGACGGGauCGCGu -3'
miRNA:   3'- uC-GGCGcuaaGUGCCGUUGCUC--GUGC- -5'
5157 3' -55.4 NC_001798.1 + 59677 0.71 0.688316
Target:  5'- cGGCuCGCG--UgGgGGCGGCGGGCACGc -3'
miRNA:   3'- -UCG-GCGCuaAgUgCCGUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 58846 0.71 0.678172
Target:  5'- cGCCGCG-UagGCGGCccCGAGCGCc -3'
miRNA:   3'- uCGGCGCuAagUGCCGuuGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 58687 0.69 0.794791
Target:  5'- cGCCGCcg-UCAgGGCcGCGgcGGCGCGg -3'
miRNA:   3'- uCGGCGcuaAGUgCCGuUGC--UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 58392 0.77 0.393389
Target:  5'- gAGCCGCGucagacccucgCGCGGCGcaggcggccagcGCGAGCGCGc -3'
miRNA:   3'- -UCGGCGCuaa--------GUGCCGU------------UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 56800 0.67 0.902952
Target:  5'- cGGCCGCGGaggUCACGGUggaGACGguggaaaAGC-CGu -3'
miRNA:   3'- -UCGGCGCUa--AGUGCCG---UUGC-------UCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 56125 0.66 0.936996
Target:  5'- gGGCCGagGAUUUucCGGUgggaaaAGCGAGUGCGg -3'
miRNA:   3'- -UCGGCg-CUAAGu-GCCG------UUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 55989 0.69 0.81259
Target:  5'- aGGCCGCGGg----GGCGAgGGGCugGu -3'
miRNA:   3'- -UCGGCGCUaagugCCGUUgCUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 55894 0.7 0.757498
Target:  5'- gGGUa-CGAgaaccaaCGCGGCGACGAGCGCa -3'
miRNA:   3'- -UCGgcGCUaa-----GUGCCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 55854 0.71 0.698412
Target:  5'- cAGCCGCuGUcgCACGGCGagaguccccACGAGgACGa -3'
miRNA:   3'- -UCGGCGcUAa-GUGCCGU---------UGCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 54669 0.68 0.829733
Target:  5'- cAGCCGCGGcgcgcccgcUCGCGGCuc--AGCGCGa -3'
miRNA:   3'- -UCGGCGCUa--------AGUGCCGuugcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 54388 0.69 0.785666
Target:  5'- gGGCCGCGg--CGCGGuCGGCGGGaGCu -3'
miRNA:   3'- -UCGGCGCuaaGUGCC-GUUGCUCgUGc -5'
5157 3' -55.4 NC_001798.1 + 53919 0.69 0.81259
Target:  5'- uGGaCCGCGGgcccaGCGGCAccACGGGCuCGa -3'
miRNA:   3'- -UC-GGCGCUaag--UGCCGU--UGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 53633 0.67 0.906076
Target:  5'- cGCCGCGGccaaguacgccgcCGCGGUGGCGGgguuGCGCGa -3'
miRNA:   3'- uCGGCGCUaa-----------GUGCCGUUGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 53245 0.72 0.637308
Target:  5'- cGGCCGUGGgcgUCcuGCGGCAGCGcGC-CGa -3'
miRNA:   3'- -UCGGCGCUa--AG--UGCCGUUGCuCGuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.