Results 101 - 120 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5157 | 3' | -55.4 | NC_001798.1 | + | 53103 | 0.67 | 0.897183 |
Target: 5'- cGCCGgGcg-CGCGGCG-CGAGCucccuGCGg -3' miRNA: 3'- uCGGCgCuaaGUGCCGUuGCUCG-----UGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 52879 | 0.67 | 0.882997 |
Target: 5'- gGGCCGCGggUC-CGcGCGugGAcaucaugGCGCa -3' miRNA: 3'- -UCGGCGCuaAGuGC-CGUugCU-------CGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 52607 | 0.69 | 0.81259 |
Target: 5'- uGGCCGCGuUUgACGGCGggucgACGgcccccgaggugGGCACGu -3' miRNA: 3'- -UCGGCGCuAAgUGCCGU-----UGC------------UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 52335 | 0.72 | 0.657782 |
Target: 5'- cAGCCcCGGggUCGUGGCGGcCGAGCACGa -3' miRNA: 3'- -UCGGcGCUa-AGUGCCGUU-GCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 52282 | 0.67 | 0.897183 |
Target: 5'- -cCCGCG-UUUGCGGaCGugGAGCAgGa -3' miRNA: 3'- ucGGCGCuAAGUGCC-GUugCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 51885 | 0.67 | 0.883695 |
Target: 5'- cGGCCGagcucCACGGCAguucGCGAGCcucACGg -3' miRNA: 3'- -UCGGCgcuaaGUGCCGU----UGCUCG---UGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 48155 | 0.67 | 0.876614 |
Target: 5'- cGCCGCGGUcgggCGCcuGGCGGCcacGCACGc -3' miRNA: 3'- uCGGCGCUAa---GUG--CCGUUGcu-CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 47814 | 0.66 | 0.915674 |
Target: 5'- cGUCGCGGgcucUCACGGCccCGGccccGCGCGc -3' miRNA: 3'- uCGGCGCUa---AGUGCCGuuGCU----CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 47024 | 0.66 | 0.921364 |
Target: 5'- gAGCCGcCGAa-CGCGGCAG-GcGCACGc -3' miRNA: 3'- -UCGGC-GCUaaGUGCCGUUgCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 43682 | 0.67 | 0.897183 |
Target: 5'- gGGUCGUGGguggUCACGGCccggagauGCGuggccaGGCGCGg -3' miRNA: 3'- -UCGGCGCUa---AGUGCCGu-------UGC------UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 43099 | 0.72 | 0.656759 |
Target: 5'- cGCCGCGuccgcgacCACGGUcgcuuccGGCGGGCGCGc -3' miRNA: 3'- uCGGCGCuaa-----GUGCCG-------UUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 42216 | 0.74 | 0.525998 |
Target: 5'- cGCCGCGGgucggcgugCGCGGCGACGAaCGCc -3' miRNA: 3'- uCGGCGCUaa-------GUGCCGUUGCUcGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 41328 | 0.66 | 0.932024 |
Target: 5'- gGGCCuccaaGCaGUUUACGGCcuCGuGCACGu -3' miRNA: 3'- -UCGG-----CGcUAAGUGCCGuuGCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36911 | 0.7 | 0.747874 |
Target: 5'- gAGCCGCGAauccccaCAUGGCGuuGgGGGCugGg -3' miRNA: 3'- -UCGGCGCUaa-----GUGCCGU--UgCUCGugC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36594 | 0.69 | 0.785666 |
Target: 5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3' miRNA: 3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36552 | 0.69 | 0.785666 |
Target: 5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3' miRNA: 3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36510 | 0.69 | 0.785666 |
Target: 5'- cGGCCggGCGGgggcgCGCGGCGGcCGGGCGgGg -3' miRNA: 3'- -UCGG--CGCUaa---GUGCCGUU-GCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36298 | 0.71 | 0.718428 |
Target: 5'- uGCCGUGGgugUgGCGGCG--GGGCGCGg -3' miRNA: 3'- uCGGCGCUa--AgUGCCGUugCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36131 | 0.69 | 0.817805 |
Target: 5'- cGCCGCGAUcccgccgguggggCGCGGCGGCGGuCGgGg -3' miRNA: 3'- uCGGCGCUAa------------GUGCCGUUGCUcGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 36045 | 0.72 | 0.664932 |
Target: 5'- uGGCgGCGGUgguCGGCGugcugccggaggcuGCGGGCGCGg -3' miRNA: 3'- -UCGgCGCUAaguGCCGU--------------UGCUCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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