Results 81 - 100 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5157 | 3' | -55.4 | NC_001798.1 | + | 56800 | 0.67 | 0.902952 |
Target: 5'- cGGCCGCGGaggUCACGGUggaGACGguggaaaAGC-CGu -3' miRNA: 3'- -UCGGCGCUa--AGUGCCG---UUGC-------UCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 52282 | 0.67 | 0.897183 |
Target: 5'- -cCCGCG-UUUGCGGaCGugGAGCAgGa -3' miRNA: 3'- ucGGCGCuAAGUGCC-GUugCUCGUgC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 109552 | 0.67 | 0.897183 |
Target: 5'- -cCCGCGGccuauggCGCGGUGGCcccGAGCGCGg -3' miRNA: 3'- ucGGCGCUaa-----GUGCCGUUG---CUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 8544 | 0.67 | 0.897183 |
Target: 5'- cGGaCGUGggUCGCGGCGAgGGGUggggGCGa -3' miRNA: 3'- -UCgGCGCuaAGUGCCGUUgCUCG----UGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 143766 | 0.67 | 0.897183 |
Target: 5'- gGGCCugaucGCG-UUCugGGCAugG-GCGCc -3' miRNA: 3'- -UCGG-----CGCuAAGugCCGUugCuCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 53103 | 0.67 | 0.897183 |
Target: 5'- cGCCGgGcg-CGCGGCG-CGAGCucccuGCGg -3' miRNA: 3'- uCGGCgCuaaGUGCCGUuGCUCG-----UGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 43682 | 0.67 | 0.897183 |
Target: 5'- gGGUCGUGGguggUCACGGCccggagauGCGuggccaGGCGCGg -3' miRNA: 3'- -UCGGCGCUa---AGUGCCGu-------UGC------UCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 1429 | 0.67 | 0.903582 |
Target: 5'- cAGCgCGCGcAggCGCGGU-GCGAGUGCGc -3' miRNA: 3'- -UCG-GCGC-UaaGUGCCGuUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 15177 | 0.67 | 0.903582 |
Target: 5'- cGCCGCGAUguUCGgGGgGugggggggcugGCGAGC-CGg -3' miRNA: 3'- uCGGCGCUA--AGUgCCgU-----------UGCUCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 53633 | 0.67 | 0.906076 |
Target: 5'- cGCCGCGGccaaguacgccgcCGCGGUGGCGGgguuGCGCGa -3' miRNA: 3'- uCGGCGCUaa-----------GUGCCGUUGCU----CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 100704 | 0.66 | 0.915674 |
Target: 5'- cGCCGCcauGUUCGCGGgGcUGuGCGCGu -3' miRNA: 3'- uCGGCGc--UAAGUGCCgUuGCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 87174 | 0.66 | 0.915674 |
Target: 5'- -cCCGCGugcagCGCgGGCGACGGGCGg- -3' miRNA: 3'- ucGGCGCuaa--GUG-CCGUUGCUCGUgc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 84679 | 0.66 | 0.915674 |
Target: 5'- cGCCGCGAaccgUUCGCGcuuucgGGCGAGCAg- -3' miRNA: 3'- uCGGCGCU----AAGUGCcg----UUGCUCGUgc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 64731 | 0.66 | 0.915674 |
Target: 5'- aGGCgGCGGUg---GGC-AUGAGCGCGa -3' miRNA: 3'- -UCGgCGCUAagugCCGuUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 47814 | 0.66 | 0.915674 |
Target: 5'- cGUCGCGGgcucUCACGGCccCGGccccGCGCGc -3' miRNA: 3'- uCGGCGCUa---AGUGCCGuuGCU----CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 29896 | 0.66 | 0.915674 |
Target: 5'- cGGCUGCGGguuggggguggUCGCgGGCggUGGGCuCGg -3' miRNA: 3'- -UCGGCGCUa----------AGUG-CCGuuGCUCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 28672 | 0.66 | 0.915674 |
Target: 5'- cGCCGCG--UgGCGGCGGcCGAG-GCGg -3' miRNA: 3'- uCGGCGCuaAgUGCCGUU-GCUCgUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 96666 | 0.66 | 0.909746 |
Target: 5'- gAGCgGCGc--CACGGCcGCgcugGAGCGCGu -3' miRNA: 3'- -UCGgCGCuaaGUGCCGuUG----CUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 78558 | 0.66 | 0.909746 |
Target: 5'- gGGCCuGCGGgaggCGCuGGCcgcgcGCGAGCGCc -3' miRNA: 3'- -UCGG-CGCUaa--GUG-CCGu----UGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 3007 | 0.66 | 0.909746 |
Target: 5'- cGGgCGCGGgggCGCGGCGGgcCGGGCucCGg -3' miRNA: 3'- -UCgGCGCUaa-GUGCCGUU--GCUCGu-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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