miRNA display CGI


Results 101 - 120 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 154125 0.67 0.883695
Target:  5'- cGGCgGCGGggacCcCGGCGGCGGGaCAUGg -3'
miRNA:   3'- -UCGgCGCUaa--GuGCCGUUGCUC-GUGC- -5'
5157 3' -55.4 NC_001798.1 + 118617 0.67 0.883695
Target:  5'- uGCCGCGg--CGCuGCAGCG-GUGCGa -3'
miRNA:   3'- uCGGCGCuaaGUGcCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 102384 0.67 0.883695
Target:  5'- cGCCugGCGGUcgGCGGCGAUGgcccccaccAGCGCGg -3'
miRNA:   3'- uCGG--CGCUAagUGCCGUUGC---------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 51885 0.67 0.883695
Target:  5'- cGGCCGagcucCACGGCAguucGCGAGCcucACGg -3'
miRNA:   3'- -UCGGCgcuaaGUGCCGU----UGCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 4839 0.67 0.883695
Target:  5'- gGGCCGCGcggCGgGGCGACG-GUcCGg -3'
miRNA:   3'- -UCGGCGCuaaGUgCCGUUGCuCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 8544 0.67 0.897183
Target:  5'- cGGaCGUGggUCGCGGCGAgGGGUggggGCGa -3'
miRNA:   3'- -UCgGCGCuaAGUGCCGUUgCUCG----UGC- -5'
5157 3' -55.4 NC_001798.1 + 109552 0.67 0.897183
Target:  5'- -cCCGCGGccuauggCGCGGUGGCcccGAGCGCGg -3'
miRNA:   3'- ucGGCGCUaa-----GUGCCGUUG---CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 29896 0.66 0.915674
Target:  5'- cGGCUGCGGguuggggguggUCGCgGGCggUGGGCuCGg -3'
miRNA:   3'- -UCGGCGCUa----------AGUG-CCGuuGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 28672 0.66 0.915674
Target:  5'- cGCCGCG--UgGCGGCGGcCGAG-GCGg -3'
miRNA:   3'- uCGGCGCuaAgUGCCGUU-GCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 96666 0.66 0.909746
Target:  5'- gAGCgGCGc--CACGGCcGCgcugGAGCGCGu -3'
miRNA:   3'- -UCGgCGCuaaGUGCCGuUG----CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 78558 0.66 0.909746
Target:  5'- gGGCCuGCGGgaggCGCuGGCcgcgcGCGAGCGCc -3'
miRNA:   3'- -UCGG-CGCUaa--GUG-CCGu----UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 3007 0.66 0.909746
Target:  5'- cGGgCGCGGgggCGCGGCGGgcCGGGCucCGg -3'
miRNA:   3'- -UCgGCGCUaa-GUGCCGUU--GCUCGu-GC- -5'
5157 3' -55.4 NC_001798.1 + 53633 0.67 0.906076
Target:  5'- cGCCGCGGccaaguacgccgcCGCGGUGGCGGgguuGCGCGa -3'
miRNA:   3'- uCGGCGCUaa-----------GUGCCGUUGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 15177 0.67 0.903582
Target:  5'- cGCCGCGAUguUCGgGGgGugggggggcugGCGAGC-CGg -3'
miRNA:   3'- uCGGCGCUA--AGUgCCgU-----------UGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 1429 0.67 0.903582
Target:  5'- cAGCgCGCGcAggCGCGGU-GCGAGUGCGc -3'
miRNA:   3'- -UCG-GCGC-UaaGUGCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 135798 0.67 0.903582
Target:  5'- aGGCCGUGug-CGCGGCccggggcgucAugGAGgACGc -3'
miRNA:   3'- -UCGGCGCuaaGUGCCG----------UugCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 135715 0.67 0.903582
Target:  5'- gGGCCGCGuacgCcCGGCGGcCGAgguuauGCGCGa -3'
miRNA:   3'- -UCGGCGCuaa-GuGCCGUU-GCU------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 23950 0.67 0.903582
Target:  5'- cGCCGag---CugGGCGACGcGGCGCa -3'
miRNA:   3'- uCGGCgcuaaGugCCGUUGC-UCGUGc -5'
5157 3' -55.4 NC_001798.1 + 56800 0.67 0.902952
Target:  5'- cGGCCGCGGaggUCACGGUggaGACGguggaaaAGC-CGu -3'
miRNA:   3'- -UCGGCGCUa--AGUGCCG---UUGC-------UCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 52282 0.67 0.897183
Target:  5'- -cCCGCG-UUUGCGGaCGugGAGCAgGa -3'
miRNA:   3'- ucGGCGCuAAGUGCC-GUugCUCGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.