Results 61 - 80 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5157 | 3' | -55.4 | NC_001798.1 | + | 88134 | 0.66 | 0.926814 |
Target: 5'- -cUCGCGggUCugGGCcACGAuCACGu -3' miRNA: 3'- ucGGCGCuaAGugCCGuUGCUcGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 60844 | 0.66 | 0.926814 |
Target: 5'- cGuCCGCucg-CGCGGCGACGGGauCGCGu -3' miRNA: 3'- uC-GGCGcuaaGUGCCGUUGCUC--GUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 29896 | 0.66 | 0.915674 |
Target: 5'- cGGCUGCGGguuggggguggUCGCgGGCggUGGGCuCGg -3' miRNA: 3'- -UCGGCGCUa----------AGUG-CCGuuGCUCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 28672 | 0.66 | 0.915674 |
Target: 5'- cGCCGCG--UgGCGGCGGcCGAG-GCGg -3' miRNA: 3'- uCGGCGCuaAgUGCCGUU-GCUCgUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 96666 | 0.66 | 0.909746 |
Target: 5'- gAGCgGCGc--CACGGCcGCgcugGAGCGCGu -3' miRNA: 3'- -UCGgCGCuaaGUGCCGuUG----CUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 78558 | 0.66 | 0.909746 |
Target: 5'- gGGCCuGCGGgaggCGCuGGCcgcgcGCGAGCGCc -3' miRNA: 3'- -UCGG-CGCUaa--GUG-CCGu----UGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 3007 | 0.66 | 0.909746 |
Target: 5'- cGGgCGCGGgggCGCGGCGGgcCGGGCucCGg -3' miRNA: 3'- -UCgGCGCUaa-GUGCCGUU--GCUCGu-GC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 53633 | 0.67 | 0.906076 |
Target: 5'- cGCCGCGGccaaguacgccgcCGCGGUGGCGGgguuGCGCGa -3' miRNA: 3'- uCGGCGCUaa-----------GUGCCGUUGCU----CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 15177 | 0.67 | 0.903582 |
Target: 5'- cGCCGCGAUguUCGgGGgGugggggggcugGCGAGC-CGg -3' miRNA: 3'- uCGGCGCUA--AGUgCCgU-----------UGCUCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 1429 | 0.67 | 0.903582 |
Target: 5'- cAGCgCGCGcAggCGCGGU-GCGAGUGCGc -3' miRNA: 3'- -UCG-GCGC-UaaGUGCCGuUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 47814 | 0.66 | 0.915674 |
Target: 5'- cGUCGCGGgcucUCACGGCccCGGccccGCGCGc -3' miRNA: 3'- uCGGCGCUa---AGUGCCGuuGCU----CGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 64731 | 0.66 | 0.915674 |
Target: 5'- aGGCgGCGGUg---GGC-AUGAGCGCGa -3' miRNA: 3'- -UCGgCGCUAagugCCGuUGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 116780 | 0.66 | 0.921364 |
Target: 5'- uGCUGUGcucCGCGGCGcccgacGCGGGCGCc -3' miRNA: 3'- uCGGCGCuaaGUGCCGU------UGCUCGUGc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 104419 | 0.66 | 0.921364 |
Target: 5'- gAGCCGcCGAagCACGGCca-GGGC-CGu -3' miRNA: 3'- -UCGGC-GCUaaGUGCCGuugCUCGuGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 47024 | 0.66 | 0.921364 |
Target: 5'- gAGCCGcCGAa-CGCGGCAG-GcGCACGc -3' miRNA: 3'- -UCGGC-GCUaaGUGCCGUUgCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 28252 | 0.66 | 0.921364 |
Target: 5'- cGCCGCcgc-CGC-GCAAgGAGCGCGg -3' miRNA: 3'- uCGGCGcuaaGUGcCGUUgCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 77783 | 0.66 | 0.921364 |
Target: 5'- gAGCUGCGccgccugCA-GGCGcugGCGGGCACGc -3' miRNA: 3'- -UCGGCGCuaa----GUgCCGU---UGCUCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 100704 | 0.66 | 0.915674 |
Target: 5'- cGCCGCcauGUUCGCGGgGcUGuGCGCGu -3' miRNA: 3'- uCGGCGc--UAAGUGCCgUuGCuCGUGC- -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 87174 | 0.66 | 0.915674 |
Target: 5'- -cCCGCGugcagCGCgGGCGACGGGCGg- -3' miRNA: 3'- ucGGCGCuaa--GUG-CCGUUGCUCGUgc -5' |
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5157 | 3' | -55.4 | NC_001798.1 | + | 84679 | 0.66 | 0.915674 |
Target: 5'- cGCCGCGAaccgUUCGCGcuuucgGGCGAGCAg- -3' miRNA: 3'- uCGGCGCU----AAGUGCcg----UUGCUCGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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