miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 97833 0.66 0.926814
Target:  5'- -uCUGCGcccUgACGGCGggcGCGGGCACGg -3'
miRNA:   3'- ucGGCGCua-AgUGCCGU---UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 116780 0.66 0.921364
Target:  5'- uGCUGUGcucCGCGGCGcccgacGCGGGCGCc -3'
miRNA:   3'- uCGGCGCuaaGUGCCGU------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 104419 0.66 0.921364
Target:  5'- gAGCCGcCGAagCACGGCca-GGGC-CGu -3'
miRNA:   3'- -UCGGC-GCUaaGUGCCGuugCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 47024 0.66 0.921364
Target:  5'- gAGCCGcCGAa-CGCGGCAG-GcGCACGc -3'
miRNA:   3'- -UCGGC-GCUaaGUGCCGUUgCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 28252 0.66 0.921364
Target:  5'- cGCCGCcgc-CGC-GCAAgGAGCGCGg -3'
miRNA:   3'- uCGGCGcuaaGUGcCGUUgCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 77783 0.66 0.921364
Target:  5'- gAGCUGCGccgccugCA-GGCGcugGCGGGCACGc -3'
miRNA:   3'- -UCGGCGCuaa----GUgCCGU---UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 28672 0.66 0.915674
Target:  5'- cGCCGCG--UgGCGGCGGcCGAG-GCGg -3'
miRNA:   3'- uCGGCGCuaAgUGCCGUU-GCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 29896 0.66 0.915674
Target:  5'- cGGCUGCGGguuggggguggUCGCgGGCggUGGGCuCGg -3'
miRNA:   3'- -UCGGCGCUa----------AGUG-CCGuuGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 47814 0.66 0.915674
Target:  5'- cGUCGCGGgcucUCACGGCccCGGccccGCGCGc -3'
miRNA:   3'- uCGGCGCUa---AGUGCCGuuGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 64731 0.66 0.915674
Target:  5'- aGGCgGCGGUg---GGC-AUGAGCGCGa -3'
miRNA:   3'- -UCGgCGCUAagugCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 84679 0.66 0.915674
Target:  5'- cGCCGCGAaccgUUCGCGcuuucgGGCGAGCAg- -3'
miRNA:   3'- uCGGCGCU----AAGUGCcg----UUGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 87174 0.66 0.915674
Target:  5'- -cCCGCGugcagCGCgGGCGACGGGCGg- -3'
miRNA:   3'- ucGGCGCuaa--GUG-CCGUUGCUCGUgc -5'
5157 3' -55.4 NC_001798.1 + 100704 0.66 0.915674
Target:  5'- cGCCGCcauGUUCGCGGgGcUGuGCGCGu -3'
miRNA:   3'- uCGGCGc--UAAGUGCCgUuGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 3007 0.66 0.909746
Target:  5'- cGGgCGCGGgggCGCGGCGGgcCGGGCucCGg -3'
miRNA:   3'- -UCgGCGCUaa-GUGCCGUU--GCUCGu-GC- -5'
5157 3' -55.4 NC_001798.1 + 78558 0.66 0.909746
Target:  5'- gGGCCuGCGGgaggCGCuGGCcgcgcGCGAGCGCc -3'
miRNA:   3'- -UCGG-CGCUaa--GUG-CCGu----UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 96666 0.66 0.909746
Target:  5'- gAGCgGCGc--CACGGCcGCgcugGAGCGCGu -3'
miRNA:   3'- -UCGgCGCuaaGUGCCGuUG----CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 53633 0.67 0.906076
Target:  5'- cGCCGCGGccaaguacgccgcCGCGGUGGCGGgguuGCGCGa -3'
miRNA:   3'- uCGGCGCUaa-----------GUGCCGUUGCU----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1429 0.67 0.903582
Target:  5'- cAGCgCGCGcAggCGCGGU-GCGAGUGCGc -3'
miRNA:   3'- -UCG-GCGC-UaaGUGCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 135798 0.67 0.903582
Target:  5'- aGGCCGUGug-CGCGGCccggggcgucAugGAGgACGc -3'
miRNA:   3'- -UCGGCGCuaaGUGCCG----------UugCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 135715 0.67 0.903582
Target:  5'- gGGCCGCGuacgCcCGGCGGcCGAgguuauGCGCGa -3'
miRNA:   3'- -UCGGCGCuaa-GuGCCGUU-GCU------CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.