miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 5' -56.1 NC_001798.1 + 9675 0.66 0.912717
Target:  5'- gGGCGCGGgaUGgggGGCUCucacGUGCGg-- -3'
miRNA:   3'- -CCGCGCCgaGCa--CUGAGu---CACGUagu -5'
5157 5' -56.1 NC_001798.1 + 12366 0.66 0.900414
Target:  5'- gGGCGCGGUggcuaaucgUCGgGACagCGGUGCGc-- -3'
miRNA:   3'- -CCGCGCCG---------AGCaCUGa-GUCACGUagu -5'
5157 5' -56.1 NC_001798.1 + 102229 0.67 0.865666
Target:  5'- gGGCGCGGCUCGgGGCgg---GCcUCGc -3'
miRNA:   3'- -CCGCGCCGAGCaCUGagucaCGuAGU- -5'
5157 5' -56.1 NC_001798.1 + 119012 0.67 0.850263
Target:  5'- cGCGCGGCUgGUcGCcCGGgGCAUCc -3'
miRNA:   3'- cCGCGCCGAgCAcUGaGUCaCGUAGu -5'
5157 5' -56.1 NC_001798.1 + 111003 0.67 0.850263
Target:  5'- cGCGCGGUaugCGUGGCcgCGGccagGCGUCc -3'
miRNA:   3'- cCGCGCCGa--GCACUGa-GUCa---CGUAGu -5'
5157 5' -56.1 NC_001798.1 + 57402 0.67 0.850263
Target:  5'- gGGCcaGCGGgUCGUGGCggu-UGCAUCGc -3'
miRNA:   3'- -CCG--CGCCgAGCACUGagucACGUAGU- -5'
5157 5' -56.1 NC_001798.1 + 35283 0.67 0.850263
Target:  5'- gGGCGgGGCUCG-GGCUCuccgGCGg-- -3'
miRNA:   3'- -CCGCgCCGAGCaCUGAGuca-CGUagu -5'
5157 5' -56.1 NC_001798.1 + 51857 0.68 0.79955
Target:  5'- gGGCGCGGCUCGgagcucGACgaCAGgGCGg-- -3'
miRNA:   3'- -CCGCGCCGAGCa-----CUGa-GUCaCGUagu -5'
5157 5' -56.1 NC_001798.1 + 17138 0.68 0.79955
Target:  5'- uGCGCGGUgaggCGcGAUUCcgcGUGCGUCGg -3'
miRNA:   3'- cCGCGCCGa---GCaCUGAGu--CACGUAGU- -5'
5157 5' -56.1 NC_001798.1 + 11982 0.69 0.78135
Target:  5'- aGGCGgGGCU-GUgGGCgUGGUGCGUCGa -3'
miRNA:   3'- -CCGCgCCGAgCA-CUGaGUCACGUAGU- -5'
5157 5' -56.1 NC_001798.1 + 54675 0.71 0.653281
Target:  5'- cGGCGCGcccGCUCGcGGCUCAGcGCGa-- -3'
miRNA:   3'- -CCGCGC---CGAGCaCUGAGUCaCGUagu -5'
5157 5' -56.1 NC_001798.1 + 31899 0.72 0.592018
Target:  5'- aGGCGCGGgUCG-GACUCGGgccccgcgGCcUCGu -3'
miRNA:   3'- -CCGCGCCgAGCaCUGAGUCa-------CGuAGU- -5'
5157 5' -56.1 NC_001798.1 + 115989 1.1 0.002403
Target:  5'- uGGCGCGGCUCGUGACUCAGUGCAUCAc -3'
miRNA:   3'- -CCGCGCCGAGCACUGAGUCACGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.