miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 5' -53.6 NC_001798.1 + 115383 1.05 0.007124
Target:  5'- uUUUGGGGAAAGGACCACCAGGUUCUGc -3'
miRNA:   3'- -AAACCCCUUUCCUGGUGGUCCAAGAC- -5'
5158 5' -53.6 NC_001798.1 + 153684 0.67 0.933701
Target:  5'- --cGGGGAcgcGGGGGCCGCCGccGGcgCa- -3'
miRNA:   3'- aaaCCCCU---UUCCUGGUGGU--CCaaGac -5'
5158 5' -53.6 NC_001798.1 + 26691 0.67 0.933701
Target:  5'- --aGGGGGAAGGA--AUCGGGcgUCUGu -3'
miRNA:   3'- aaaCCCCUUUCCUggUGGUCCa-AGAC- -5'
5158 5' -53.6 NC_001798.1 + 31062 0.67 0.928413
Target:  5'- --cGGGGGucGGGCacuaACCGGGggCUc -3'
miRNA:   3'- aaaCCCCUuuCCUGg---UGGUCCaaGAc -5'
5158 5' -53.6 NC_001798.1 + 48679 0.67 0.928413
Target:  5'- --cGGGGGAcGGGCCGCCcGGagCg- -3'
miRNA:   3'- aaaCCCCUUuCCUGGUGGuCCaaGac -5'
5158 5' -53.6 NC_001798.1 + 112254 0.67 0.921731
Target:  5'- cUUUGGGGccugucccccGGACCACCAGGc---- -3'
miRNA:   3'- -AAACCCCuuu-------CCUGGUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 43026 0.67 0.917072
Target:  5'- --gGGGGAGcgcGGGGCC-CCGGGcgCa- -3'
miRNA:   3'- aaaCCCCUU---UCCUGGuGGUCCaaGac -5'
5158 5' -53.6 NC_001798.1 + 27232 0.67 0.917072
Target:  5'- --cGGGGGAGGcGGCCGCgGGGg---- -3'
miRNA:   3'- aaaCCCCUUUC-CUGGUGgUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 15257 0.67 0.916479
Target:  5'- gUUGGGGggGuacgggcGGugCcCCGGGUUCc- -3'
miRNA:   3'- aAACCCCuuU-------CCugGuGGUCCAAGac -5'
5158 5' -53.6 NC_001798.1 + 23557 0.66 0.938244
Target:  5'- --cGGGGGugcccgcGAGGGCC-CCGGGggCg- -3'
miRNA:   3'- aaaCCCCU-------UUCCUGGuGGUCCaaGac -5'
5158 5' -53.6 NC_001798.1 + 39771 0.66 0.938736
Target:  5'- --gGGGGGAAGccGACCGCCuGGUc--- -3'
miRNA:   3'- aaaCCCCUUUC--CUGGUGGuCCAagac -5'
5158 5' -53.6 NC_001798.1 + 137480 0.66 0.938736
Target:  5'- gUUGGGGAGGGGG--GCCGGGg---- -3'
miRNA:   3'- aAACCCCUUUCCUggUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 104588 0.66 0.956377
Target:  5'- --cGGGGAAcgucgcccGGGGCCGCC-GGUa--- -3'
miRNA:   3'- aaaCCCCUU--------UCCUGGUGGuCCAagac -5'
5158 5' -53.6 NC_001798.1 + 146298 0.66 0.952336
Target:  5'- --cGGGGAGuGGGCgGCCGGGc---- -3'
miRNA:   3'- aaaCCCCUUuCCUGgUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 9118 0.66 0.952336
Target:  5'- --cGGGGGAGccGCCGCgAGGUggUCUGc -3'
miRNA:   3'- aaaCCCCUUUccUGGUGgUCCA--AGAC- -5'
5158 5' -53.6 NC_001798.1 + 29494 0.66 0.948051
Target:  5'- --cGGGGAcGGGGCCGCCccgagAGGg---- -3'
miRNA:   3'- aaaCCCCUuUCCUGGUGG-----UCCaagac -5'
5158 5' -53.6 NC_001798.1 + 66211 0.66 0.948051
Target:  5'- --aGGGGuucAGGGCCuggGCCAGGaUCa- -3'
miRNA:   3'- aaaCCCCuu-UCCUGG---UGGUCCaAGac -5'
5158 5' -53.6 NC_001798.1 + 5773 0.66 0.943519
Target:  5'- --aGGGGgcGGGGCCGCaGGGUa--- -3'
miRNA:   3'- aaaCCCCuuUCCUGGUGgUCCAagac -5'
5158 5' -53.6 NC_001798.1 + 5635 0.66 0.943519
Target:  5'- --aGGGGgcGGGGCCGCaGGGUa--- -3'
miRNA:   3'- aaaCCCCuuUCCUGGUGgUCCAagac -5'
5158 5' -53.6 NC_001798.1 + 138883 0.66 0.94068
Target:  5'- aUUUGGGGAAGcuggucgguccgcuuGGGCCGCCcGGcgCa- -3'
miRNA:   3'- -AAACCCCUUU---------------CCUGGUGGuCCaaGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.