miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 3' -54.3 NC_001798.1 + 60768 0.66 0.945578
Target:  5'- ---gAAGCGGCGCaaaggCCUGCAGgaUCCc -3'
miRNA:   3'- guagUUUGUCGCGga---GGACGUC--AGGa -5'
5160 3' -54.3 NC_001798.1 + 1311 0.66 0.940939
Target:  5'- -cUCGAGCAGCGCCcgcgcgcagaacUCCcgccGCGGcCCg -3'
miRNA:   3'- guAGUUUGUCGCGG------------AGGa---CGUCaGGa -5'
5160 3' -54.3 NC_001798.1 + 68781 0.66 0.936052
Target:  5'- --cCGggUGGCcggugugugugGCCUCCUGgGGUCCg -3'
miRNA:   3'- guaGUuuGUCG-----------CGGAGGACgUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 10974 0.66 0.936052
Target:  5'- aGUCGGGCGGCGaCUCCUuaaaugcgcgGCGGgCCUc -3'
miRNA:   3'- gUAGUUUGUCGCgGAGGA----------CGUCaGGA- -5'
5160 3' -54.3 NC_001798.1 + 110877 0.66 0.936052
Target:  5'- --gUAAGCAGCGCgUCCagguacccgGCGGUUCg -3'
miRNA:   3'- guaGUUUGUCGCGgAGGa--------CGUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 143372 0.67 0.919888
Target:  5'- cCGUCGAgaggccccACGuGCGCgUCCggUGCGGUCCc -3'
miRNA:   3'- -GUAGUU--------UGU-CGCGgAGG--ACGUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 3065 0.67 0.913999
Target:  5'- cCGUCGAAgcccuccgcCAGCGCCUCCaggaucccgcgGCAGgcggCCa -3'
miRNA:   3'- -GUAGUUU---------GUCGCGGAGGa----------CGUCa---GGa -5'
5160 3' -54.3 NC_001798.1 + 96590 0.67 0.907861
Target:  5'- gCAUgGAGCuGUGCUUCCUGCAugauGUCg- -3'
miRNA:   3'- -GUAgUUUGuCGCGGAGGACGU----CAGga -5'
5160 3' -54.3 NC_001798.1 + 18340 0.67 0.894846
Target:  5'- ---gGGACGGaCGCCUCCUGUcucuugucgGGUCUa -3'
miRNA:   3'- guagUUUGUC-GCGGAGGACG---------UCAGGa -5'
5160 3' -54.3 NC_001798.1 + 63661 0.68 0.865962
Target:  5'- gAUCGAgucGCAuucccgcacccGCGCCUCCaGCcAGUCCa -3'
miRNA:   3'- gUAGUU---UGU-----------CGCGGAGGaCG-UCAGGa -5'
5160 3' -54.3 NC_001798.1 + 66983 0.69 0.833555
Target:  5'- uCAUCGucguCAGuCGCC-CCUGCGGcCCa -3'
miRNA:   3'- -GUAGUuu--GUC-GCGGaGGACGUCaGGa -5'
5160 3' -54.3 NC_001798.1 + 88330 0.7 0.779361
Target:  5'- gCGUCuacgaGGACGGCcCCgaacgCCUGCAGUCCc -3'
miRNA:   3'- -GUAG-----UUUGUCGcGGa----GGACGUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 139537 0.71 0.740341
Target:  5'- aCGUCAcGCAgGUGCCgcgCCUGCAGugguUCCg -3'
miRNA:   3'- -GUAGUuUGU-CGCGGa--GGACGUC----AGGa -5'
5160 3' -54.3 NC_001798.1 + 108546 0.71 0.729306
Target:  5'- --aCAAcccCGGCGCCUCCgcgcuguUGCGGUCCc -3'
miRNA:   3'- guaGUUu--GUCGCGGAGG-------ACGUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 70100 0.73 0.60579
Target:  5'- uGUCGGACAGCGCgCUCCa--GGUCCc -3'
miRNA:   3'- gUAGUUUGUCGCG-GAGGacgUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 72234 0.74 0.533501
Target:  5'- cCGUCGAGCAGCuGCggCCcGCGGUCCa -3'
miRNA:   3'- -GUAGUUUGUCG-CGgaGGaCGUCAGGa -5'
5160 3' -54.3 NC_001798.1 + 77779 0.75 0.474097
Target:  5'- gGUCGAGCuGCGCCgCCUGCAGgcgCUg -3'
miRNA:   3'- gUAGUUUGuCGCGGaGGACGUCa--GGa -5'
5160 3' -54.3 NC_001798.1 + 114907 1.07 0.004762
Target:  5'- cCAUCAAACAGCGCCUCCUGCAGUCCUu -3'
miRNA:   3'- -GUAGUUUGUCGCGGAGGACGUCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.