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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5161 | 3' | -52.6 | NC_001798.1 | + | 36514 | 0.66 | 0.982759 |
Target: 5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3' miRNA: 3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 36556 | 0.66 | 0.982759 |
Target: 5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3' miRNA: 3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 36598 | 0.66 | 0.982759 |
Target: 5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3' miRNA: 3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 69490 | 0.66 | 0.983916 |
Target: 5'- cGAGCGAuGGGCGgGcGCAGgacgcgccggagCGGGGc -3' miRNA: 3'- -CUUGCUuCCCGCaCaCGUCaa----------GCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 108850 | 0.66 | 0.984654 |
Target: 5'- uGGACGAcGGGCGggcugGC-GUUCGGGu -3' miRNA: 3'- -CUUGCUuCCCGCaca--CGuCAAGCUCc -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 27158 | 0.66 | 0.984654 |
Target: 5'- gGAGgGAGGGGC-UGcUGCgAGcUCGGGGc -3' miRNA: 3'- -CUUgCUUCCCGcAC-ACG-UCaAGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 15480 | 0.66 | 0.984654 |
Target: 5'- uGGGCGggGGGguCGUGgggGCuGGUguggUGGGGg -3' miRNA: 3'- -CUUGCuuCCC--GCACa--CG-UCAa---GCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 154301 | 0.66 | 0.984654 |
Target: 5'- -uGCGGgcccucuuaaGGGGCGgcgGCAGgaCGGGGa -3' miRNA: 3'- cuUGCU----------UCCCGCacaCGUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 100715 | 0.66 | 0.984654 |
Target: 5'- --uCGcGGGGC-UGUGCGcGUucuUCGAGGg -3' miRNA: 3'- cuuGCuUCCCGcACACGU-CA---AGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 136872 | 0.66 | 0.984654 |
Target: 5'- cAGCG-AGGGCGUG-GCGuGgcucCGGGGa -3' miRNA: 3'- cUUGCuUCCCGCACaCGU-Caa--GCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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