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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5161 | 3' | -52.6 | NC_001798.1 | + | 23893 | 0.66 | 0.980692 |
Target: 5'- aGGCGGAGgaGGCGcGgGCccGGUUCGAGGc -3' miRNA: 3'- cUUGCUUC--CCGCaCaCG--UCAAGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 23546 | 0.71 | 0.841116 |
Target: 5'- cGACGAGGaGGCGgggGUGCccg-CGAGGg -3' miRNA: 3'- cUUGCUUC-CCGCa--CACGucaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 16228 | 0.66 | 0.980692 |
Target: 5'- uGugGggGGGCG-GUGgGGc-CGGGGc -3' miRNA: 3'- cUugCuuCCCGCaCACgUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 15480 | 0.66 | 0.984654 |
Target: 5'- uGGGCGggGGGguCGUGgggGCuGGUguggUGGGGg -3' miRNA: 3'- -CUUGCuuCCC--GCACa--CG-UCAa---GCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 15345 | 0.71 | 0.857244 |
Target: 5'- uAGCGggGGGCGag-GCGGUgaGGGGg -3' miRNA: 3'- cUUGCuuCCCGCacaCGUCAagCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 12927 | 0.66 | 0.980037 |
Target: 5'- cGGCGAuuuuuaagcuguauAGGGCGacgGUGCgcuGGUuuUCGGGGa -3' miRNA: 3'- cUUGCU--------------UCCCGCa--CACG---UCA--AGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 12713 | 0.72 | 0.824205 |
Target: 5'- gGGGCGGcgGGGGCGUgGUGCGGcgCGAc- -3' miRNA: 3'- -CUUGCU--UCCCGCA-CACGUCaaGCUcc -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 4260 | 0.69 | 0.924435 |
Target: 5'- aGACGAGGaGGCGgaUGCAGa-CGAGGa -3' miRNA: 3'- cUUGCUUC-CCGCacACGUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 2576 | 0.74 | 0.699913 |
Target: 5'- gGGGCGggGGGCGUccGcGCGGcucuucUUCGGGGg -3' miRNA: 3'- -CUUGCuuCCCGCA--CaCGUC------AAGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 2538 | 0.66 | 0.978446 |
Target: 5'- gGGGCGggGGGCGcGgcccccGCGGga-GGGGc -3' miRNA: 3'- -CUUGCuuCCCGCaCa-----CGUCaagCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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