miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 3' -52.6 NC_001798.1 + 36598 0.66 0.982759
Target:  5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3'
miRNA:   3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 48530 0.69 0.918793
Target:  5'- uGGCGAGGGGCGggagGgGCGGga-GGGGc -3'
miRNA:   3'- cUUGCUUCCCGCa---CaCGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 50574 0.73 0.740195
Target:  5'- gGggUGggGGGUGUGUGCcGUUgGGuuGGg -3'
miRNA:   3'- -CuuGCuuCCCGCACACGuCAAgCU--CC- -5'
5161 3' -52.6 NC_001798.1 + 51012 0.66 0.978446
Target:  5'- aGGACGAgcccgAGGGCG-GUGgAGU-CGGGu -3'
miRNA:   3'- -CUUGCU-----UCCCGCaCACgUCAaGCUCc -5'
5161 3' -52.6 NC_001798.1 + 51325 0.7 0.886928
Target:  5'- cGACGuuuuGGGGCGgguggGCGGUUCGcGGg -3'
miRNA:   3'- cUUGCu---UCCCGCaca--CGUCAAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 56189 0.68 0.944538
Target:  5'- gGggUGggGuGGgGUGUGguGgguaCGGGGg -3'
miRNA:   3'- -CuuGCuuC-CCgCACACguCaa--GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 57522 0.81 0.36071
Target:  5'- ---gGggGGGCGUggGUGUGGUUCGGGGg -3'
miRNA:   3'- cuugCuuCCCGCA--CACGUCAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 66438 0.69 0.924435
Target:  5'- aGAUGAuAGGGCGUGUauGC-GUUgGGGGg -3'
miRNA:   3'- cUUGCU-UCCCGCACA--CGuCAAgCUCC- -5'
5161 3' -52.6 NC_001798.1 + 66543 0.7 0.900396
Target:  5'- aGGCGggGGGCGc-UGCcgaaGGUUCGuGGg -3'
miRNA:   3'- cUUGCuuCCCGCacACG----UCAAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 69490 0.66 0.983916
Target:  5'- cGAGCGAuGGGCGgGcGCAGgacgcgccggagCGGGGc -3'
miRNA:   3'- -CUUGCUuCCCGCaCaCGUCaa----------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 83644 0.73 0.759791
Target:  5'- gGAGCGGAGGGgaUGUGCGGcUCGcGGg -3'
miRNA:   3'- -CUUGCUUCCCgcACACGUCaAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 85821 0.66 0.980692
Target:  5'- uGACGGgggGGGGCGgggGCGGg-CGGGGg -3'
miRNA:   3'- cUUGCU---UCCCGCacaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 97250 0.69 0.918793
Target:  5'- cGGGCGgcGGGCGga-GCAcuucgaucgcgcGUUCGGGGg -3'
miRNA:   3'- -CUUGCuuCCCGCacaCGU------------CAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 97531 0.68 0.957067
Target:  5'- aGGAgGggGGGCGgagGcGUGGcgCGGGGa -3'
miRNA:   3'- -CUUgCuuCCCGCa--CaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 98870 0.69 0.924435
Target:  5'- --cCGAcGGGCGccacggugGUGCAGUUUGAGc -3'
miRNA:   3'- cuuGCUuCCCGCa-------CACGUCAAGCUCc -5'
5161 3' -52.6 NC_001798.1 + 100715 0.66 0.984654
Target:  5'- --uCGcGGGGC-UGUGCGcGUucuUCGAGGg -3'
miRNA:   3'- cuuGCuUCCCGcACACGU-CA---AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 100978 0.67 0.970551
Target:  5'- --cCGAccccgGGGGCGUGgGCGGggaGGGGg -3'
miRNA:   3'- cuuGCU-----UCCCGCACaCGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 101865 0.76 0.616064
Target:  5'- cGGCGGAgggggguGGGCGUGUGCGGgg-GAGGg -3'
miRNA:   3'- cUUGCUU-------CCCGCACACGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 108850 0.66 0.984654
Target:  5'- uGGACGAcGGGCGggcugGC-GUUCGGGu -3'
miRNA:   3'- -CUUGCUuCCCGCaca--CGuCAAGCUCc -5'
5161 3' -52.6 NC_001798.1 + 112828 0.73 0.77892
Target:  5'- uGGGCGucAGGGCGUG-GguGUgaauuUCGGGGg -3'
miRNA:   3'- -CUUGCu-UCCCGCACaCguCA-----AGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.