Results 41 - 60 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 121610 | 0.66 | 0.68578 |
Target: 5'- gCUCGUccCGCCaaacacgcgauaCGCggccGACGGCgCGCGCCUc -3' miRNA: 3'- -GAGUA--GCGG------------GCG----CUGCCGgGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 153013 | 0.66 | 0.68578 |
Target: 5'- --gGUCGCCgG-GGCGGaguCCGgGCCCg -3' miRNA: 3'- gagUAGCGGgCgCUGCCg--GGCgUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 1913 | 0.66 | 0.68578 |
Target: 5'- aCUCcacggCGCCgGCGAaGGCCaGguCCCg -3' miRNA: 3'- -GAGua---GCGGgCGCUgCCGGgCguGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 92497 | 0.66 | 0.68578 |
Target: 5'- uUCAcggCGgCCGCcACcuGGCCCccaGCACCCa -3' miRNA: 3'- gAGUa--GCgGGCGcUG--CCGGG---CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 94021 | 0.66 | 0.68578 |
Target: 5'- aUUAUCGgcaaCCGCGA-GGCCCuGCACa- -3' miRNA: 3'- gAGUAGCg---GGCGCUgCCGGG-CGUGgg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 147899 | 0.66 | 0.682902 |
Target: 5'- gUCGUCGUUcccgggggggcaggCGCGGgucgGGCCCGUacGCCCa -3' miRNA: 3'- gAGUAGCGG--------------GCGCUg---CCGGGCG--UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 68201 | 0.66 | 0.676174 |
Target: 5'- -cCGUCGUCaauagacgaucaCGCG-CaGGCCCGcCACCCc -3' miRNA: 3'- gaGUAGCGG------------GCGCuG-CCGGGC-GUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 52975 | 0.66 | 0.666536 |
Target: 5'- -----gGCgCGCGaccgggcuggGCGGCCCGCcacGCCCa -3' miRNA: 3'- gaguagCGgGCGC----------UGCCGGGCG---UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 134635 | 0.66 | 0.666536 |
Target: 5'- gUCGagGUgUGCGAgguCGGCCUGCgGCCCc -3' miRNA: 3'- gAGUagCGgGCGCU---GCCGGGCG-UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 138701 | 0.66 | 0.666536 |
Target: 5'- --aGUCGaaCGCGACGGCCagaucagaaGC-CCCg -3' miRNA: 3'- gagUAGCggGCGCUGCCGGg--------CGuGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 78753 | 0.66 | 0.666536 |
Target: 5'- gCUCGacgUGCCCGCGGuuaucUGGCUagaGCacGCCCa -3' miRNA: 3'- -GAGUa--GCGGGCGCU-----GCCGGg--CG--UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 35590 | 0.66 | 0.675211 |
Target: 5'- gCUCGgcugCGgCCGCGggcuccgGgGGCuCCGCACUCu -3' miRNA: 3'- -GAGUa---GCgGGCGC-------UgCCG-GGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 28976 | 0.66 | 0.675211 |
Target: 5'- gCUC--CGCCCGCcccagggGGCGGCgccggccaaCCGCGCgCCg -3' miRNA: 3'- -GAGuaGCGGGCG-------CUGCCG---------GGCGUG-GG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 471 | 0.66 | 0.676174 |
Target: 5'- ---cUCcCCCGCGGCcgccuccCCCGCGCCCc -3' miRNA: 3'- gaguAGcGGGCGCUGcc-----GGGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 67131 | 0.66 | 0.676174 |
Target: 5'- uCUCggCGCCgccccuggcauCGCGACGGgCgcaGCACUCg -3' miRNA: 3'- -GAGuaGCGG-----------GCGCUGCCgGg--CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 25398 | 0.66 | 0.676174 |
Target: 5'- cCUCAuguUCGaCCCGCGcgcgcuggccucGCuGGCCgCGCGCUg -3' miRNA: 3'- -GAGU---AGC-GGGCGC------------UG-CCGG-GCGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 33742 | 0.66 | 0.676174 |
Target: 5'- aCUCAccccacccCGCCCGC-ACaccuGCCCGCcacGCCCg -3' miRNA: 3'- -GAGUa-------GCGGGCGcUGc---CGGGCG---UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 69526 | 0.66 | 0.676174 |
Target: 5'- -gCGUgGCCCGCGA--GCUCGCGCg- -3' miRNA: 3'- gaGUAgCGGGCGCUgcCGGGCGUGgg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 86466 | 0.66 | 0.676174 |
Target: 5'- uUCGUgaGCCUGCuuCGGgCCGCggGCCCc -3' miRNA: 3'- gAGUAg-CGGGCGcuGCCgGGCG--UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 104748 | 0.66 | 0.676174 |
Target: 5'- uCUCGUCGCCgauuacCG-CGGCCagaCGCGCCa -3' miRNA: 3'- -GAGUAGCGGgc----GCuGCCGG---GCGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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