miRNA display CGI


Results 81 - 100 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 56949 0.67 0.608428
Target:  5'- -aCGUCGCCUuaaaCGGCuGGCCCuccaGCACCg -3'
miRNA:   3'- gaGUAGCGGGc---GCUG-CCGGG----CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 91598 0.67 0.605526
Target:  5'- uUUAUCgGCCCgGCaggccgcgcuuaugGGCGGCCgGCcGCCCg -3'
miRNA:   3'- gAGUAG-CGGG-CG--------------CUGCCGGgCG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 74285 0.67 0.604559
Target:  5'- uUUAUCGCCaaggugcgggcggGCGACGuguaCCCGUACCUg -3'
miRNA:   3'- gAGUAGCGGg------------CGCUGCc---GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 126411 0.67 0.602625
Target:  5'- gCUCGUCcCCCGaGGCccccGGCCCugcggccaagcuaagGCGCCCg -3'
miRNA:   3'- -GAGUAGcGGGCgCUG----CCGGG---------------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 139310 0.67 0.598761
Target:  5'- gUCGcCGcCCCGCGucCGcaucGCCgGCGCCCg -3'
miRNA:   3'- gAGUaGC-GGGCGCu-GC----CGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 62273 0.67 0.598761
Target:  5'- -cCAg-GCCCGCcgGGCGGCCCggcgggagcGCGCCa -3'
miRNA:   3'- gaGUagCGGGCG--CUGCCGGG---------CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 39920 0.67 0.598761
Target:  5'- ----aCGCCgCGuCGAUGGCCUcCGCCCc -3'
miRNA:   3'- gaguaGCGG-GC-GCUGCCGGGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 24369 0.67 0.598761
Target:  5'- -aCGaCGCCCGCGGgaaGCCCGcCGCCg -3'
miRNA:   3'- gaGUaGCGGGCGCUgc-CGGGC-GUGGg -5'
5161 5' -62.4 NC_001798.1 + 21769 0.67 0.598761
Target:  5'- cCUUuaUGUgCGCGAggaaCGGCCCGCcCCCc -3'
miRNA:   3'- -GAGuaGCGgGCGCU----GCCGGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 74750 0.67 0.608428
Target:  5'- ----cCGCCCGCGAagcccuCGGcCCCGgACgCCg -3'
miRNA:   3'- gaguaGCGGGCGCU------GCC-GGGCgUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 86981 0.67 0.608428
Target:  5'- -cCGUCGCuaCCGCGGCuucuucgccGCCCuCGCCCa -3'
miRNA:   3'- gaGUAGCG--GGCGCUGc--------CGGGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 118803 0.67 0.618111
Target:  5'- aUCGUCGCCUGCcccgugGACcuggGGCUcaCGCACgCCg -3'
miRNA:   3'- gAGUAGCGGGCG------CUG----CCGG--GCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 96163 0.67 0.618111
Target:  5'- ---cUCGCCa-UGGCGG-CCGCGCCCc -3'
miRNA:   3'- gaguAGCGGgcGCUGCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 89137 0.67 0.618111
Target:  5'- cCUCcagGUgCGCGACGGCCuCGgGCCg -3'
miRNA:   3'- -GAGuagCGgGCGCUGCCGG-GCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 25007 0.67 0.618111
Target:  5'- -cCGUCG-CCGCGGCcgacucGCucgCCGCGCCCg -3'
miRNA:   3'- gaGUAGCgGGCGCUGc-----CG---GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 19372 0.67 0.618111
Target:  5'- aUCAUccCGCCCGCauccGGCGaCCCaccccacgcaGCGCCCg -3'
miRNA:   3'- gAGUA--GCGGGCG----CUGCcGGG----------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 128261 0.67 0.618111
Target:  5'- -gCAUgGUggaCCGCGGgcuCGGCCgGCACCUc -3'
miRNA:   3'- gaGUAgCG---GGCGCU---GCCGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 122004 0.67 0.618111
Target:  5'- -gCGUCGCCuCGgGGCuccGCCaggGCGCCCu -3'
miRNA:   3'- gaGUAGCGG-GCgCUGc--CGGg--CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 6058 0.67 0.618111
Target:  5'- ----aCGCCgGCGGCgagcggGGCaccgaCGCACCCg -3'
miRNA:   3'- gaguaGCGGgCGCUG------CCGg----GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 107712 0.67 0.608428
Target:  5'- -cCAUCGCCgagauaCGCGACcuGGCgCGCacguuuGCCCg -3'
miRNA:   3'- gaGUAGCGG------GCGCUG--CCGgGCG------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.