miRNA display CGI


Results 121 - 140 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 103034 0.67 0.608428
Target:  5'- ---cUCGgCCuCGGCGGCCucgcguCGCACCCc -3'
miRNA:   3'- gaguAGCgGGcGCUGCCGG------GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 56949 0.67 0.608428
Target:  5'- -aCGUCGCCUuaaaCGGCuGGCCCuccaGCACCg -3'
miRNA:   3'- gaGUAGCGGGc---GCUG-CCGGG----CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 91598 0.67 0.605526
Target:  5'- uUUAUCgGCCCgGCaggccgcgcuuaugGGCGGCCgGCcGCCCg -3'
miRNA:   3'- gAGUAG-CGGG-CG--------------CUGCCGGgCG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 127940 0.67 0.597795
Target:  5'- -gCGggGCCCcggGCGAaaaggccCGGCCCGCGuCCCc -3'
miRNA:   3'- gaGUagCGGG---CGCU-------GCCGGGCGU-GGG- -5'
5161 5' -62.4 NC_001798.1 + 51954 0.67 0.598761
Target:  5'- gCUCA--GCgCGgGAgGGgCCGCGCCCc -3'
miRNA:   3'- -GAGUagCGgGCgCUgCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 2970 0.67 0.598761
Target:  5'- -gCGUCgGCgUGCGGCggggcggccGGCCCGCggGCCCc -3'
miRNA:   3'- gaGUAG-CGgGCGCUG---------CCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 35551 0.67 0.598761
Target:  5'- -gCGUUGCCgGCc-CGGCCCG-GCCCc -3'
miRNA:   3'- gaGUAGCGGgCGcuGCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 47651 0.67 0.598761
Target:  5'- gUCcgCGCgacgacuuccgCCGCGGCgcuGGCCCgaugcgcgcGCGCCCg -3'
miRNA:   3'- gAGuaGCG-----------GGCGCUG---CCGGG---------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 21769 0.67 0.598761
Target:  5'- cCUUuaUGUgCGCGAggaaCGGCCCGCcCCCc -3'
miRNA:   3'- -GAGuaGCGgGCGCU----GCCGGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 24369 0.67 0.598761
Target:  5'- -aCGaCGCCCGCGGgaaGCCCGcCGCCg -3'
miRNA:   3'- gaGUaGCGGGCGCUgc-CGGGC-GUGGg -5'
5161 5' -62.4 NC_001798.1 + 39920 0.67 0.598761
Target:  5'- ----aCGCCgCGuCGAUGGCCUcCGCCCc -3'
miRNA:   3'- gaguaGCGG-GC-GCUGCCGGGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 62273 0.67 0.598761
Target:  5'- -cCAg-GCCCGCcgGGCGGCCCggcgggagcGCGCCa -3'
miRNA:   3'- gaGUagCGGGCG--CUGCCGGG---------CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 139310 0.67 0.598761
Target:  5'- gUCGcCGcCCCGCGucCGcaucGCCgGCGCCCg -3'
miRNA:   3'- gAGUaGC-GGGCGCu-GC----CGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 126411 0.67 0.602625
Target:  5'- gCUCGUCcCCCGaGGCccccGGCCCugcggccaagcuaagGCGCCCg -3'
miRNA:   3'- -GAGUAGcGGGCgCUG----CCGGG---------------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 74285 0.67 0.604559
Target:  5'- uUUAUCGCCaaggugcgggcggGCGACGuguaCCCGUACCUg -3'
miRNA:   3'- gAGUAGCGGg------------CGCUGCc---GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 58027 0.68 0.560371
Target:  5'- gCUCGcCGCCaucCGCGGCcGCaCCaGCACCCc -3'
miRNA:   3'- -GAGUaGCGG---GCGCUGcCG-GG-CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 70623 0.68 0.560371
Target:  5'- --gAUCGaCCGCuGGCGGaCCGuCACCCa -3'
miRNA:   3'- gagUAGCgGGCG-CUGCCgGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 23923 0.68 0.560371
Target:  5'- cCUCGggcgccccggCGCCCGUGugGGCgCCGaGCUg -3'
miRNA:   3'- -GAGUa---------GCGGGCGCugCCG-GGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 132331 0.68 0.560371
Target:  5'- gCUCAcccCGCCCgGCGACgugaccacauggGGCCgGUACCg -3'
miRNA:   3'- -GAGUa--GCGGG-CGCUG------------CCGGgCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 45520 0.68 0.560371
Target:  5'- ---uUCGCCC-CG--GGCCCGUGCCCc -3'
miRNA:   3'- gaguAGCGGGcGCugCCGGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.