Results 61 - 80 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 93263 | 0.71 | 0.376561 |
Target: 5'- ----aCGCCCGC---GGCCCGCGCCg -3' miRNA: 3'- gaguaGCGGGCGcugCCGGGCGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 24475 | 0.71 | 0.368851 |
Target: 5'- gCUCGcCGCCCuGgGGCGccugaGCgCCGCGCCCg -3' miRNA: 3'- -GAGUaGCGGG-CgCUGC-----CG-GGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 2106 | 0.71 | 0.353759 |
Target: 5'- ----cCGCCCccgGCG-CGGCCCGCGgCCa -3' miRNA: 3'- gaguaGCGGG---CGCuGCCGGGCGUgGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 92982 | 0.71 | 0.353759 |
Target: 5'- -cCGUgGCCCGCG-CGGCCgCcCACCUg -3' miRNA: 3'- gaGUAgCGGGCGCuGCCGG-GcGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 125535 | 0.7 | 0.428404 |
Target: 5'- -gCAUCGCCgccgaGCGucaGGCCCGCcgacgccucgucgacGCCCa -3' miRNA: 3'- gaGUAGCGGg----CGCug-CCGGGCG---------------UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 10576 | 0.7 | 0.433477 |
Target: 5'- cCUCGUCGCCCGCGgggaACGGgggaCUGUAUgCu -3' miRNA: 3'- -GAGUAGCGGGCGC----UGCCg---GGCGUGgG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 111728 | 0.7 | 0.442009 |
Target: 5'- --gGUgGCCCGCu-UGGCCCccGCGCCCc -3' miRNA: 3'- gagUAgCGGGCGcuGCCGGG--CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 75999 | 0.7 | 0.400333 |
Target: 5'- -cCGggCGCCgGCGGCagGGCCCcGUGCCCg -3' miRNA: 3'- gaGUa-GCGGgCGCUG--CCGGG-CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 121064 | 0.7 | 0.436879 |
Target: 5'- -aCGUgCGCCCGCG--GGCCCcgaggacgcgcacacGCACCCc -3' miRNA: 3'- gaGUA-GCGGGCGCugCCGGG---------------CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 113493 | 0.7 | 0.416704 |
Target: 5'- aUCAUgGgCgGCG-CGGCCCuguGCGCCCu -3' miRNA: 3'- gAGUAgCgGgCGCuGCCGGG---CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 80784 | 0.7 | 0.408467 |
Target: 5'- aCUCG-CGCCC-CGGCGGgCCGgACgCCg -3' miRNA: 3'- -GAGUaGCGGGcGCUGCCgGGCgUG-GG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 102392 | 0.7 | 0.433477 |
Target: 5'- --gGUCGgCgGCGAUGGCCCcCACCa -3' miRNA: 3'- gagUAGCgGgCGCUGCCGGGcGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 65836 | 0.7 | 0.416704 |
Target: 5'- -aCGUUGCCgGUGAUGGCCCGgagggugGCCUg -3' miRNA: 3'- gaGUAGCGGgCGCUGCCGGGCg------UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 109265 | 0.7 | 0.442009 |
Target: 5'- cCUCGUCgggGUuuGCGuucgucaacGCGGCCCaCGCCCa -3' miRNA: 3'- -GAGUAG---CGggCGC---------UGCCGGGcGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 40781 | 0.7 | 0.408467 |
Target: 5'- -aCAgcagCGCCCGCaGAC-GCCCGacCACCCu -3' miRNA: 3'- gaGUa---GCGGGCG-CUGcCGGGC--GUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 5606 | 0.7 | 0.400333 |
Target: 5'- -cCGUUgGUCCGCgGGCGGCuCCGC-CCCa -3' miRNA: 3'- gaGUAG-CGGGCG-CUGCCG-GGCGuGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 3789 | 0.7 | 0.416704 |
Target: 5'- -cCGgggCGCCCGaGGCcucgaaccgGGCCCGCGCCUc -3' miRNA: 3'- gaGUa--GCGGGCgCUG---------CCGGGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 20680 | 0.7 | 0.433477 |
Target: 5'- aUCAUCGUCgucCGACGGcCCCGUuCCCu -3' miRNA: 3'- gAGUAGCGGgc-GCUGCC-GGGCGuGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 25090 | 0.7 | 0.425041 |
Target: 5'- -gCGcCGCCgGgCGGCGcCCCGCGCCCc -3' miRNA: 3'- gaGUaGCGGgC-GCUGCcGGGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 24422 | 0.7 | 0.425041 |
Target: 5'- -gCGUCGCCgGcCGACGaGCgCGCgguGCCCg -3' miRNA: 3'- gaGUAGCGGgC-GCUGC-CGgGCG---UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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