miRNA display CGI


Results 81 - 100 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 75999 0.7 0.400333
Target:  5'- -cCGggCGCCgGCGGCagGGCCCcGUGCCCg -3'
miRNA:   3'- gaGUa-GCGGgCGCUG--CCGGG-CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 20680 0.7 0.433477
Target:  5'- aUCAUCGUCgucCGACGGcCCCGUuCCCu -3'
miRNA:   3'- gAGUAGCGGgc-GCUGCC-GGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 45083 0.7 0.442009
Target:  5'- -cCggCGCCuCGUGAaGGCgCGCGCCCu -3'
miRNA:   3'- gaGuaGCGG-GCGCUgCCGgGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 52496 0.7 0.441152
Target:  5'- -aCGcgCGCCggcgcagggacgaCGCGGCGGCCgCGCGCgCCg -3'
miRNA:   3'- gaGUa-GCGG-------------GCGCUGCCGG-GCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 25090 0.7 0.425041
Target:  5'- -gCGcCGCCgGgCGGCGcCCCGCGCCCc -3'
miRNA:   3'- gaGUaGCGGgC-GCUGCcGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 24422 0.7 0.425041
Target:  5'- -gCGUCGCCgGcCGACGaGCgCGCgguGCCCg -3'
miRNA:   3'- gaGUAGCGGgC-GCUGC-CGgGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 65836 0.7 0.416704
Target:  5'- -aCGUUGCCgGUGAUGGCCCGgagggugGCCUg -3'
miRNA:   3'- gaGUAGCGGgCGCUGCCGGGCg------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 118484 0.7 0.420027
Target:  5'- aUCAUCGUCC-CGGuugcguugcgcuuucCGGCCCucccGCACCCc -3'
miRNA:   3'- gAGUAGCGGGcGCU---------------GCCGGG----CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 120638 0.69 0.495086
Target:  5'- gUCGUCGCCgGUcucGCgGGCCUGCcCCCc -3'
miRNA:   3'- gAGUAGCGGgCGc--UG-CCGGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 77661 0.69 0.495086
Target:  5'- -cCGUCGCCgaccugacggCGaagauGGCGGCCCagcGCGCCCg -3'
miRNA:   3'- gaGUAGCGG----------GCg----CUGCCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 14804 0.69 0.504218
Target:  5'- -gUAUCGCCUGCGccccgccCGGCC-GCGCCa -3'
miRNA:   3'- gaGUAGCGGGCGCu------GCCGGgCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 118901 0.69 0.480635
Target:  5'- cCUCGUccCGCCCgucuucgagggccagGCGACGGaCgUGCGCCUg -3'
miRNA:   3'- -GAGUA--GCGGG---------------CGCUGCC-GgGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 122630 0.69 0.495086
Target:  5'- -gCcgCGCuCCaaGGCGGCCCGCGCa- -3'
miRNA:   3'- gaGuaGCG-GGcgCUGCCGGGCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 92936 0.69 0.504218
Target:  5'- gUCGUCggGCCCGCcGCcguGGCCCuGCguGCCCg -3'
miRNA:   3'- gAGUAG--CGGGCGcUG---CCGGG-CG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 3499 0.69 0.504218
Target:  5'- gCUCAUgGCCa-CGGCGGCCgccacgUGCGCCa -3'
miRNA:   3'- -GAGUAgCGGgcGCUGCCGG------GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 31597 0.69 0.503301
Target:  5'- -cCGUCGcCCCGCGcgucCGGaguccgcCCCGCGCCg -3'
miRNA:   3'- gaGUAGC-GGGCGCu---GCC-------GGGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 22866 0.69 0.495086
Target:  5'- -cCGUCGCCCcgccGCG-CGGCCCGgGuuCg -3'
miRNA:   3'- gaGUAGCGGG----CGCuGCCGGGCgUggG- -5'
5161 5' -62.4 NC_001798.1 + 2786 0.69 0.495086
Target:  5'- gCUCAgcaggCGCgggcuCCGCGGCaGCgCCGgGCCCa -3'
miRNA:   3'- -GAGUa----GCG-----GGCGCUGcCG-GGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 34791 0.69 0.486031
Target:  5'- -aCGcCGCCgGCG-CGGCCCgGgGCCCc -3'
miRNA:   3'- gaGUaGCGGgCGCuGCCGGG-CgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 27563 0.69 0.486031
Target:  5'- -gCggCGCCCGCGggggaGCGGCCgGC-UCCg -3'
miRNA:   3'- gaGuaGCGGGCGC-----UGCCGGgCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.