miRNA display CGI


Results 101 - 120 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 47965 0.69 0.468162
Target:  5'- ----cCGCCCGCGGCaGGCgaCC-CGCCCa -3'
miRNA:   3'- gaguaGCGGGCGCUG-CCG--GGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 151262 0.69 0.459354
Target:  5'- -cCA-CGgCCGUGcCGGCCCGCACggCCg -3'
miRNA:   3'- gaGUaGCgGGCGCuGCCGGGCGUG--GG- -5'
5161 5' -62.4 NC_001798.1 + 1143 0.69 0.468162
Target:  5'- cCUCggCGgcguggccagcCCCGCGGCGGUCCcCACCa -3'
miRNA:   3'- -GAGuaGC-----------GGGCGCUGCCGGGcGUGGg -5'
5161 5' -62.4 NC_001798.1 + 527 0.69 0.477055
Target:  5'- -cCcgCGCCCGCGGCcccgaGCUCGCagcaGCCCc -3'
miRNA:   3'- gaGuaGCGGGCGCUGc----CGGGCG----UGGG- -5'
5161 5' -62.4 NC_001798.1 + 3374 0.69 0.477055
Target:  5'- -gCGUCGCCgccguCGuCGGgGGUUCGCGCCCc -3'
miRNA:   3'- gaGUAGCGG-----GC-GCUgCCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 59724 0.69 0.477055
Target:  5'- -gCGUCGUCCGCGGggacaacuuCGGCCCcgggGUGCCUc -3'
miRNA:   3'- gaGUAGCGGGCGCU---------GCCGGG----CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 152135 0.69 0.477055
Target:  5'- -cCAcCGCCCGCGACcacccccaaCCCGCAgCCg -3'
miRNA:   3'- gaGUaGCGGGCGCUGcc-------GGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 118901 0.69 0.480635
Target:  5'- cCUCGUccCGCCCgucuucgagggccagGCGACGGaCgUGCGCCUg -3'
miRNA:   3'- -GAGUA--GCGGG---------------CGCUGCC-GgGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 27563 0.69 0.486031
Target:  5'- -gCggCGCCCGCGggggaGCGGCCgGC-UCCg -3'
miRNA:   3'- gaGuaGCGGGCGC-----UGCCGGgCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 77661 0.69 0.495086
Target:  5'- -cCGUCGCCgaccugacggCGaagauGGCGGCCCagcGCGCCCg -3'
miRNA:   3'- gaGUAGCGG----------GCg----CUGCCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 23455 0.69 0.45673
Target:  5'- cCUCcUCGUCUGacgaCGACGacgacgacgacgccGCCCGCGCCCc -3'
miRNA:   3'- -GAGuAGCGGGC----GCUGC--------------CGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 3499 0.69 0.504218
Target:  5'- gCUCAUgGCCa-CGGCGGCCgccacgUGCGCCa -3'
miRNA:   3'- -GAGUAgCGGgcGCUGCCGG------GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 14804 0.69 0.504218
Target:  5'- -gUAUCGCCUGCGccccgccCGGCC-GCGCCa -3'
miRNA:   3'- gaGUAGCGGGCGCu------GCCGGgCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 143126 0.69 0.468162
Target:  5'- gCUCcgCGCuuGCGcUGGCgCGCGgCCg -3'
miRNA:   3'- -GAGuaGCGggCGCuGCCGgGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 77621 0.69 0.504218
Target:  5'- aUCggCGCCaCGCGACG--CCGCGCCg -3'
miRNA:   3'- gAGuaGCGG-GCGCUGCcgGGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 97401 0.68 0.522693
Target:  5'- -aCGcCGCugCUGCGGCGGCUCGUcaGCCCc -3'
miRNA:   3'- gaGUaGCG--GGCGCUGCCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 26028 0.68 0.517122
Target:  5'- gUCuUCGCgCGCGugGaggccgcgcacgcgcGCCUGUACCCc -3'
miRNA:   3'- gAGuAGCGgGCGCugC---------------CGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 98606 0.68 0.522693
Target:  5'- -----gGCCC-CGGCGGCCCcccGCGCCUc -3'
miRNA:   3'- gaguagCGGGcGCUGCCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 74245 0.68 0.522693
Target:  5'- uCUguUUGaCCCGC-ACGGCCUGCccgcgggaacGCCCg -3'
miRNA:   3'- -GAguAGC-GGGCGcUGCCGGGCG----------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 74403 0.68 0.522693
Target:  5'- -cCGUggCGCCgGCGgaccugaccgccGCGGCCCuGCACCUc -3'
miRNA:   3'- gaGUA--GCGGgCGC------------UGCCGGG-CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.