miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 46936 0.71 0.384378
Target:  5'- aCUCAUCGCCgCGaUGACGGggaaaCCCGCAagaCUg -3'
miRNA:   3'- -GAGUAGCGG-GC-GCUGCC-----GGGCGUg--GG- -5'
5161 5' -62.4 NC_001798.1 + 32050 0.71 0.384378
Target:  5'- gCUCGccccggCGUCCGCG--GGCgCCGCGCCCc -3'
miRNA:   3'- -GAGUa-----GCGGGCGCugCCG-GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 42996 0.71 0.392303
Target:  5'- -aCAUCugGCCCcCGACGGCCagGCcGCCCg -3'
miRNA:   3'- gaGUAG--CGGGcGCUGCCGGg-CG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 23805 0.71 0.392303
Target:  5'- -cCGUgGCCCGgGGcCGGCCCccCGCCCc -3'
miRNA:   3'- gaGUAgCGGGCgCU-GCCGGGc-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 5422 0.7 0.400333
Target:  5'- gCUC--CGCCCGCG-CGGCaucucauuaGCGCCCg -3'
miRNA:   3'- -GAGuaGCGGGCGCuGCCGgg-------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 5606 0.7 0.400333
Target:  5'- -cCGUUgGUCCGCgGGCGGCuCCGC-CCCa -3'
miRNA:   3'- gaGUAG-CGGGCG-CUGCCG-GGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 75999 0.7 0.400333
Target:  5'- -cCGggCGCCgGCGGCagGGCCCcGUGCCCg -3'
miRNA:   3'- gaGUa-GCGGgCGCUG--CCGGG-CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 40781 0.7 0.408467
Target:  5'- -aCAgcagCGCCCGCaGAC-GCCCGacCACCCu -3'
miRNA:   3'- gaGUa---GCGGGCG-CUGcCGGGC--GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 80784 0.7 0.408467
Target:  5'- aCUCG-CGCCC-CGGCGGgCCGgACgCCg -3'
miRNA:   3'- -GAGUaGCGGGcGCUGCCgGGCgUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 65836 0.7 0.416704
Target:  5'- -aCGUUGCCgGUGAUGGCCCGgagggugGCCUg -3'
miRNA:   3'- gaGUAGCGGgCGCUGCCGGGCg------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 134722 0.7 0.416704
Target:  5'- uUCGUgaGCCCgGCGACGGguucUCCGC-CCCg -3'
miRNA:   3'- gAGUAg-CGGG-CGCUGCC----GGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 3789 0.7 0.416704
Target:  5'- -cCGgggCGCCCGaGGCcucgaaccgGGCCCGCGCCUc -3'
miRNA:   3'- gaGUa--GCGGGCgCUG---------CCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 113493 0.7 0.416704
Target:  5'- aUCAUgGgCgGCG-CGGCCCuguGCGCCCu -3'
miRNA:   3'- gAGUAgCgGgCGCuGCCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 118484 0.7 0.420027
Target:  5'- aUCAUCGUCC-CGGuugcguugcgcuuucCGGCCCucccGCACCCc -3'
miRNA:   3'- gAGUAGCGGGcGCU---------------GCCGGG----CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 25090 0.7 0.425041
Target:  5'- -gCGcCGCCgGgCGGCGcCCCGCGCCCc -3'
miRNA:   3'- gaGUaGCGGgC-GCUGCcGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 24422 0.7 0.425041
Target:  5'- -gCGUCGCCgGcCGACGaGCgCGCgguGCCCg -3'
miRNA:   3'- gaGUAGCGGgC-GCUGC-CGgGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 125535 0.7 0.428404
Target:  5'- -gCAUCGCCgccgaGCGucaGGCCCGCcgacgccucgucgacGCCCa -3'
miRNA:   3'- gaGUAGCGGg----CGCug-CCGGGCG---------------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 20680 0.7 0.433477
Target:  5'- aUCAUCGUCgucCGACGGcCCCGUuCCCu -3'
miRNA:   3'- gAGUAGCGGgc-GCUGCC-GGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 10576 0.7 0.433477
Target:  5'- cCUCGUCGCCCGCGgggaACGGgggaCUGUAUgCu -3'
miRNA:   3'- -GAGUAGCGGGCGC----UGCCg---GGCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 102392 0.7 0.433477
Target:  5'- --gGUCGgCgGCGAUGGCCCcCACCa -3'
miRNA:   3'- gagUAGCgGgCGCUGCCGGGcGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.