Results 101 - 120 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 59724 | 0.69 | 0.477055 |
Target: 5'- -gCGUCGUCCGCGGggacaacuuCGGCCCcgggGUGCCUc -3' miRNA: 3'- gaGUAGCGGGCGCU---------GCCGGG----CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 24696 | 0.69 | 0.477055 |
Target: 5'- -----gGCCCGCcGCGccCCCGCGCCCg -3' miRNA: 3'- gaguagCGGGCGcUGCc-GGGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 118901 | 0.69 | 0.480635 |
Target: 5'- cCUCGUccCGCCCgucuucgagggccagGCGACGGaCgUGCGCCUg -3' miRNA: 3'- -GAGUA--GCGGG---------------CGCUGCC-GgGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 34791 | 0.69 | 0.486031 |
Target: 5'- -aCGcCGCCgGCG-CGGCCCgGgGCCCc -3' miRNA: 3'- gaGUaGCGGgCGCuGCCGGG-CgUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 27563 | 0.69 | 0.486031 |
Target: 5'- -gCggCGCCCGCGggggaGCGGCCgGC-UCCg -3' miRNA: 3'- gaGuaGCGGGCGC-----UGCCGGgCGuGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 120638 | 0.69 | 0.495086 |
Target: 5'- gUCGUCGCCgGUcucGCgGGCCUGCcCCCc -3' miRNA: 3'- gAGUAGCGGgCGc--UG-CCGGGCGuGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 22866 | 0.69 | 0.495086 |
Target: 5'- -cCGUCGCCCcgccGCG-CGGCCCGgGuuCg -3' miRNA: 3'- gaGUAGCGGG----CGCuGCCGGGCgUggG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 2786 | 0.69 | 0.495086 |
Target: 5'- gCUCAgcaggCGCgggcuCCGCGGCaGCgCCGgGCCCa -3' miRNA: 3'- -GAGUa----GCG-----GGCGCUGcCG-GGCgUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 122630 | 0.69 | 0.495086 |
Target: 5'- -gCcgCGCuCCaaGGCGGCCCGCGCa- -3' miRNA: 3'- gaGuaGCG-GGcgCUGCCGGGCGUGgg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 77661 | 0.69 | 0.495086 |
Target: 5'- -cCGUCGCCgaccugacggCGaagauGGCGGCCCagcGCGCCCg -3' miRNA: 3'- gaGUAGCGG----------GCg----CUGCCGGG---CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 31597 | 0.69 | 0.503301 |
Target: 5'- -cCGUCGcCCCGCGcgucCGGaguccgcCCCGCGCCg -3' miRNA: 3'- gaGUAGC-GGGCGCu---GCC-------GGGCGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 3499 | 0.69 | 0.504218 |
Target: 5'- gCUCAUgGCCa-CGGCGGCCgccacgUGCGCCa -3' miRNA: 3'- -GAGUAgCGGgcGCUGCCGG------GCGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 14804 | 0.69 | 0.504218 |
Target: 5'- -gUAUCGCCUGCGccccgccCGGCC-GCGCCa -3' miRNA: 3'- gaGUAGCGGGCGCu------GCCGGgCGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 92936 | 0.69 | 0.504218 |
Target: 5'- gUCGUCggGCCCGCcGCcguGGCCCuGCguGCCCg -3' miRNA: 3'- gAGUAG--CGGGCGcUG---CCGGG-CG--UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 77621 | 0.69 | 0.504218 |
Target: 5'- aUCggCGCCaCGCGACG--CCGCGCCg -3' miRNA: 3'- gAGuaGCGG-GCGCUGCcgGGCGUGGg -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 32576 | 0.68 | 0.513421 |
Target: 5'- -gCcgCGgccCCCGCGugGaGCcgCCGCACCCu -3' miRNA: 3'- gaGuaGC---GGGCGCugC-CG--GGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 26028 | 0.68 | 0.517122 |
Target: 5'- gUCuUCGCgCGCGugGaggccgcgcacgcgcGCCUGUACCCc -3' miRNA: 3'- gAGuAGCGgGCGCugC---------------CGGGCGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 98606 | 0.68 | 0.522693 |
Target: 5'- -----gGCCC-CGGCGGCCCcccGCGCCUc -3' miRNA: 3'- gaguagCGGGcGCUGCCGGG---CGUGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 74245 | 0.68 | 0.522693 |
Target: 5'- uCUguUUGaCCCGC-ACGGCCUGCccgcgggaacGCCCg -3' miRNA: 3'- -GAguAGC-GGGCGcUGCCGGGCG----------UGGG- -5' |
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5161 | 5' | -62.4 | NC_001798.1 | + | 97401 | 0.68 | 0.522693 |
Target: 5'- -aCGcCGCugCUGCGGCGGCUCGUcaGCCCc -3' miRNA: 3'- gaGUaGCG--GGCGCUGCCGGGCG--UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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