miRNA display CGI


Results 81 - 100 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 32576 0.68 0.513421
Target:  5'- -gCcgCGgccCCCGCGugGaGCcgCCGCACCCu -3'
miRNA:   3'- gaGuaGC---GGGCGCugC-CG--GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 32774 0.74 0.243399
Target:  5'- uCUCGggagcagggcgCGCCCGCGcCGGCCgGCgacGCCCc -3'
miRNA:   3'- -GAGUa----------GCGGGCGCuGCCGGgCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 33630 0.66 0.656872
Target:  5'- ----cCGCCC-CGGCGcccaccccGCCCGCACaCCu -3'
miRNA:   3'- gaguaGCGGGcGCUGC--------CGGGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 33742 0.66 0.676174
Target:  5'- aCUCAccccacccCGCCCGC-ACaccuGCCCGCcacGCCCg -3'
miRNA:   3'- -GAGUa-------GCGGGCGcUGc---CGGGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 34791 0.69 0.486031
Target:  5'- -aCGcCGCCgGCG-CGGCCCgGgGCCCc -3'
miRNA:   3'- gaGUaGCGGgCGCuGCCGGG-CgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 34823 0.68 0.550872
Target:  5'- -cCcgCGCuCCGcCGGgGGCCCGgGCCg -3'
miRNA:   3'- gaGuaGCG-GGC-GCUgCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 35466 0.74 0.249014
Target:  5'- -cCGUCugcugGCCCGCGGCccgucugcuGGCCCGCGgCCa -3'
miRNA:   3'- gaGUAG-----CGGGCGCUG---------CCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 35551 0.67 0.598761
Target:  5'- -gCGUUGCCgGCc-CGGCCCG-GCCCc -3'
miRNA:   3'- gaGUAGCGGgCGcuGCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 35590 0.66 0.675211
Target:  5'- gCUCGgcugCGgCCGCGggcuccgGgGGCuCCGCACUCu -3'
miRNA:   3'- -GAGUa---GCgGGCGC-------UgCCG-GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 36232 0.7 0.450636
Target:  5'- -gCcgCGCCCGCGuuucuGCcGCCCGCGCgCu -3'
miRNA:   3'- gaGuaGCGGGCGC-----UGcCGGGCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 38462 0.66 0.637499
Target:  5'- gUCAUCGCCCuccucccacGCGcacgcCGGCaUCGC-CCCg -3'
miRNA:   3'- gAGUAGCGGG---------CGCu----GCCG-GGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 38885 0.66 0.647191
Target:  5'- gUCGUCcaGCCCGCacaGGCCuCGgGCCUu -3'
miRNA:   3'- gAGUAG--CGGGCGcugCCGG-GCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 39920 0.67 0.598761
Target:  5'- ----aCGCCgCGuCGAUGGCCUcCGCCCc -3'
miRNA:   3'- gaguaGCGG-GC-GCUGCCGGGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 40007 0.66 0.627804
Target:  5'- aCUCgggGUCG-UCGCGGCGGCCCuccuCGuCCCg -3'
miRNA:   3'- -GAG---UAGCgGGCGCUGCCGGGc---GU-GGG- -5'
5161 5' -62.4 NC_001798.1 + 40781 0.7 0.408467
Target:  5'- -aCAgcagCGCCCGCaGAC-GCCCGacCACCCu -3'
miRNA:   3'- gaGUa---GCGGGCG-CUGcCGGGC--GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 42725 0.78 0.137717
Target:  5'- gUCGUCGCCaccgGcCGAgGGCCCGuCGCCCg -3'
miRNA:   3'- gAGUAGCGGg---C-GCUgCCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 42996 0.71 0.392303
Target:  5'- -aCAUCugGCCCcCGACGGCCagGCcGCCCg -3'
miRNA:   3'- gaGUAG--CGGGcGCUGCCGGg-CG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 45083 0.7 0.442009
Target:  5'- -cCggCGCCuCGUGAaGGCgCGCGCCCu -3'
miRNA:   3'- gaGuaGCGG-GCGCUgCCGgGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 45520 0.68 0.560371
Target:  5'- ---uUCGCCC-CG--GGCCCGUGCCCc -3'
miRNA:   3'- gaguAGCGGGcGCugCCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 46370 0.68 0.549925
Target:  5'- ---cUCGCCCGCGuagaccaGCGauccCCCGCGCCg -3'
miRNA:   3'- gaguAGCGGGCGC-------UGCc---GGGCGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.