miRNA display CGI


Results 101 - 120 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 46417 0.66 0.637499
Target:  5'- -cCAcCGCCCcccCGGCGGUCgcgaGCGCCCc -3'
miRNA:   3'- gaGUaGCGGGc--GCUGCCGGg---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 46936 0.71 0.384378
Target:  5'- aCUCAUCGCCgCGaUGACGGggaaaCCCGCAagaCUg -3'
miRNA:   3'- -GAGUAGCGG-GC-GCUGCC-----GGGCGUg--GG- -5'
5161 5' -62.4 NC_001798.1 + 47651 0.67 0.598761
Target:  5'- gUCcgCGCgacgacuuccgCCGCGGCgcuGGCCCgaugcgcgcGCGCCCg -3'
miRNA:   3'- gAGuaGCG-----------GGCGCUG---CCGGG---------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 47965 0.69 0.468162
Target:  5'- ----cCGCCCGCGGCaGGCgaCC-CGCCCa -3'
miRNA:   3'- gaguaGCGGGCGCUG-CCG--GGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 48162 0.66 0.637499
Target:  5'- gUCGggCGCCU--GGCGGCCaCGCacGCCCg -3'
miRNA:   3'- gAGUa-GCGGGcgCUGCCGG-GCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 48346 0.68 0.532028
Target:  5'- -aCGUCGacgcgaCCGCGGCcGCCCGgggcCGCCCc -3'
miRNA:   3'- gaGUAGCg-----GGCGCUGcCGGGC----GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 51133 0.68 0.541423
Target:  5'- -cCGUCGCCgG-GA-GGCCCGCggucACCCc -3'
miRNA:   3'- gaGUAGCGGgCgCUgCCGGGCG----UGGG- -5'
5161 5' -62.4 NC_001798.1 + 51954 0.67 0.598761
Target:  5'- gCUCA--GCgCGgGAgGGgCCGCGCCCc -3'
miRNA:   3'- -GAGUagCGgGCgCUgCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 52238 0.67 0.579498
Target:  5'- uCUCggUGgUCGUgggGGCGcGCCUGCACCCg -3'
miRNA:   3'- -GAGuaGCgGGCG---CUGC-CGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 52496 0.7 0.441152
Target:  5'- -aCGcgCGCCggcgcagggacgaCGCGGCGGCCgCGCGCgCCg -3'
miRNA:   3'- gaGUa-GCGG-------------GCGCUGCCGG-GCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 52763 0.68 0.550872
Target:  5'- ---uUCGcCCCGCGuccuCGGCgCCccggGCGCCCg -3'
miRNA:   3'- gaguAGC-GGGCGCu---GCCG-GG----CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 52975 0.66 0.666536
Target:  5'- -----gGCgCGCGaccgggcuggGCGGCCCGCcacGCCCa -3'
miRNA:   3'- gaguagCGgGCGC----------UGCCGGGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 54644 0.66 0.637499
Target:  5'- -cCcgCGCCCcccgaGCaGCGGCCgGCAgCCg -3'
miRNA:   3'- gaGuaGCGGG-----CGcUGCCGGgCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 56949 0.67 0.608428
Target:  5'- -aCGUCGCCUuaaaCGGCuGGCCCuccaGCACCg -3'
miRNA:   3'- gaGUAGCGGGc---GCUG-CCGGG----CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 57581 0.66 0.68578
Target:  5'- -gCAUUGCUCGCGuuccCCCGCggGCCCa -3'
miRNA:   3'- gaGUAGCGGGCGCugccGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 58027 0.68 0.560371
Target:  5'- gCUCGcCGCCaucCGCGGCcGCaCCaGCACCCc -3'
miRNA:   3'- -GAGUaGCGG---GCGCUGcCG-GG-CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 58406 0.68 0.550872
Target:  5'- cCUCG-CGCggCGCaGGCGGCCagcgcgagCGCGCCCg -3'
miRNA:   3'- -GAGUaGCGg-GCG-CUGCCGG--------GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 58839 0.67 0.589115
Target:  5'- -cCAgcagCGCCgCGUaGGCGGCCCcgaGCGCCa -3'
miRNA:   3'- gaGUa---GCGG-GCG-CUGCCGGG---CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 59240 0.73 0.278704
Target:  5'- --uGUC-CCCGCGACacauCCCGCACCCg -3'
miRNA:   3'- gagUAGcGGGCGCUGcc--GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 59724 0.69 0.477055
Target:  5'- -gCGUCGUCCGCGGggacaacuuCGGCCCcgggGUGCCUc -3'
miRNA:   3'- gaGUAGCGGGCGCU---------GCCGGG----CGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.