miRNA display CGI


Results 81 - 100 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 105631 0.67 0.569915
Target:  5'- -aCggCGCuCCGgGAagaauUGGCCgGCGCCCa -3'
miRNA:   3'- gaGuaGCG-GGCgCU-----GCCGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 105251 0.67 0.595865
Target:  5'- cCUCggCGuCCCGCG-CGGCauccgccucuucggCCGCGgCCg -3'
miRNA:   3'- -GAGuaGC-GGGCGCuGCCG--------------GGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 105196 0.66 0.626834
Target:  5'- -gCGggGCCCgcgguggGCGACGGCgCUGC-CCCg -3'
miRNA:   3'- gaGUagCGGG-------CGCUGCCG-GGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 104748 0.66 0.676174
Target:  5'- uCUCGUCGCCgauuacCG-CGGCCagaCGCGCCa -3'
miRNA:   3'- -GAGUAGCGGgc----GCuGCCGG---GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 104594 0.75 0.202198
Target:  5'- -aCGUCGCCCGgGGCcGCCgguaGCACCCc -3'
miRNA:   3'- gaGUAGCGGGCgCUGcCGGg---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 103034 0.67 0.608428
Target:  5'- ---cUCGgCCuCGGCGGCCucgcguCGCACCCc -3'
miRNA:   3'- gaguAGCgGGcGCUGCCGG------GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 102640 0.68 0.541423
Target:  5'- -cCGUCGCCgGgCGGCggaggGGCCgggGCGCCCg -3'
miRNA:   3'- gaGUAGCGGgC-GCUG-----CCGGg--CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 102533 0.69 0.468162
Target:  5'- -cCGUC-CCCGCGGcCGGCaggCCGCACgCg -3'
miRNA:   3'- gaGUAGcGGGCGCU-GCCG---GGCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 102392 0.7 0.433477
Target:  5'- --gGUCGgCgGCGAUGGCCCcCACCa -3'
miRNA:   3'- gagUAGCgGgCGCUGCCGGGcGUGGg -5'
5161 5' -62.4 NC_001798.1 + 98606 0.68 0.522693
Target:  5'- -----gGCCC-CGGCGGCCCcccGCGCCUc -3'
miRNA:   3'- gaguagCGGGcGCUGCCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 98384 0.66 0.684821
Target:  5'- aUCGUCgagagcgGCCC-CGACGGCUgcauCGgACCCc -3'
miRNA:   3'- gAGUAG-------CGGGcGCUGCCGG----GCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 97401 0.68 0.522693
Target:  5'- -aCGcCGCugCUGCGGCGGCUCGUcaGCCCc -3'
miRNA:   3'- gaGUaGCG--GGCGCUGCCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 97027 0.66 0.637499
Target:  5'- gCUCuUCuGUCCGCGAgGaGgCCGaCGCCCu -3'
miRNA:   3'- -GAGuAG-CGGGCGCUgC-CgGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 96817 0.76 0.179634
Target:  5'- -cCAUCGCCCGCcgccuGGCGGaCCGCAUCUg -3'
miRNA:   3'- gaGUAGCGGGCG-----CUGCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 96163 0.67 0.618111
Target:  5'- ---cUCGCCa-UGGCGG-CCGCGCCCc -3'
miRNA:   3'- gaguAGCGGgcGCUGCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 95113 0.81 0.09032
Target:  5'- -----gGCCCGUGAUGGCCgCGCGCCCg -3'
miRNA:   3'- gaguagCGGGCGCUGCCGG-GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 94021 0.66 0.68578
Target:  5'- aUUAUCGgcaaCCGCGA-GGCCCuGCACa- -3'
miRNA:   3'- gAGUAGCg---GGCGCUgCCGGG-CGUGgg -5'
5161 5' -62.4 NC_001798.1 + 93743 0.66 0.647191
Target:  5'- -aCGaCGCUgaUGCGGCugcgGGCCCGcCACCCc -3'
miRNA:   3'- gaGUaGCGG--GCGCUG----CCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 93263 0.71 0.376561
Target:  5'- ----aCGCCCGC---GGCCCGCGCCg -3'
miRNA:   3'- gaguaGCGGGCGcugCCGGGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 92982 0.71 0.353759
Target:  5'- -cCGUgGCCCGCG-CGGCCgCcCACCUg -3'
miRNA:   3'- gaGUAgCGGGCGCuGCCGG-GcGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.