miRNA display CGI


Results 101 - 120 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 28729 0.66 0.647191
Target:  5'- gCUCGg-GCCCGagccCGaGCCCGgGCCCa -3'
miRNA:   3'- -GAGUagCGGGCgcu-GC-CGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 366 0.66 0.647191
Target:  5'- ----cCGCCCGCacACGGuucCCCGcCACCCc -3'
miRNA:   3'- gaguaGCGGGCGc-UGCC---GGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 133753 0.66 0.647191
Target:  5'- -gCG-CGCCCGCGugGGggCGCugCUu -3'
miRNA:   3'- gaGUaGCGGGCGCugCCggGCGugGG- -5'
5161 5' -62.4 NC_001798.1 + 105751 0.66 0.647191
Target:  5'- --uGUCGCCgGCGACaaaugagucCCCGCgcGCCCg -3'
miRNA:   3'- gagUAGCGGgCGCUGcc-------GGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 31959 0.66 0.644284
Target:  5'- gCUCGccccUCGCCCcccaggggguggggGCcaagagGGCGGCgCCGCGCCg -3'
miRNA:   3'- -GAGU----AGCGGG--------------CG------CUGCCG-GGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 19133 0.66 0.652034
Target:  5'- uUCAUCGCCacgaagaccaacgaCGCGugGGUgggggaaCCGUggccccuGCCCg -3'
miRNA:   3'- gAGUAGCGG--------------GCGCugCCG-------GGCG-------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 146980 0.66 0.65397
Target:  5'- uUCcgCGCCUcCGAgGGUCCGCcucuugccucggggACCCc -3'
miRNA:   3'- gAGuaGCGGGcGCUgCCGGGCG--------------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 16167 0.66 0.666536
Target:  5'- ----gCGCCaCG-GGCGGCCCGCGgggaCCg -3'
miRNA:   3'- gaguaGCGG-GCgCUGCCGGGCGUg---GG- -5'
5161 5' -62.4 NC_001798.1 + 153283 0.66 0.66557
Target:  5'- cCUCcgCggGUCCGCcgucuucGugGGCCCGgGCUCg -3'
miRNA:   3'- -GAGuaG--CGGGCG-------CugCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 152395 0.66 0.66074
Target:  5'- -cCGUCGCUCGCaGugccggggugcgaauGCGGCCCG-ACCg -3'
miRNA:   3'- gaGUAGCGGGCG-C---------------UGCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 72962 0.66 0.65784
Target:  5'- aUCAgCGCaCCGCagccauucaggagguGAUGGCCCacgcgaccgaggacGCGCCCc -3'
miRNA:   3'- gAGUaGCG-GGCG---------------CUGCCGGG--------------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 143810 0.66 0.656872
Target:  5'- -cCAg-GCCCG-GGCGGCgCGCGgCCa -3'
miRNA:   3'- gaGUagCGGGCgCUGCCGgGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 118995 0.66 0.656872
Target:  5'- ---cUgGCCCGCGagauagucgcGCGGCUgGuCGCCCg -3'
miRNA:   3'- gaguAgCGGGCGC----------UGCCGGgC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 86733 0.66 0.656872
Target:  5'- -aCAuUUGUCCGCGA-GGCCgGCGCgCu -3'
miRNA:   3'- gaGU-AGCGGGCGCUgCCGGgCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 83343 0.66 0.656872
Target:  5'- -cCAuUCGgCCGCGGCGucGCCCGCGaaCa -3'
miRNA:   3'- gaGU-AGCgGGCGCUGC--CGGGCGUggG- -5'
5161 5' -62.4 NC_001798.1 + 75337 0.66 0.656872
Target:  5'- aUCAaCGCCCu--GCGGUcgCCGUACCCg -3'
miRNA:   3'- gAGUaGCGGGcgcUGCCG--GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 33630 0.66 0.656872
Target:  5'- ----cCGCCC-CGGCGcccaccccGCCCGCACaCCu -3'
miRNA:   3'- gaguaGCGGGcGCUGC--------CGGGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 27755 0.66 0.656872
Target:  5'- -----gGCCCGCaacACGGCCCGgGCUg -3'
miRNA:   3'- gaguagCGGGCGc--UGCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 25250 0.66 0.656872
Target:  5'- ----cCGaCCCGCagGGCGGCUgGCGCCg -3'
miRNA:   3'- gaguaGC-GGGCG--CUGCCGGgCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 15124 0.66 0.656872
Target:  5'- gUCGUCGUCCuCGGgGGguucgccgucCCCGgCGCCCu -3'
miRNA:   3'- gAGUAGCGGGcGCUgCC----------GGGC-GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.