Results 121 - 140 of 280 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 28939 | 0.66 | 0.63653 |
Target: 5'- ----cCGCuauauauCCGCGAgGGCCCgGCGCCg -3' miRNA: 3'- gaguaGCG-------GGCGCUgCCGGG-CGUGGg -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 4918 | 0.66 | 0.63653 |
Target: 5'- gUCGUC-UCCGCcGCGGCCCGgAgacguccCCCg -3' miRNA: 3'- gAGUAGcGGGCGcUGCCGGGCgU-------GGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 38885 | 0.66 | 0.647191 |
Target: 5'- gUCGUCcaGCCCGCacaGGCCuCGgGCCUu -3' miRNA: 3'- gAGUAG--CGGGCGcugCCGG-GCgUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 134423 | 0.66 | 0.647191 |
Target: 5'- -aCGUCGaCCCGCuGGCccuGUCCGCGCgCg -3' miRNA: 3'- gaGUAGC-GGGCG-CUGc--CGGGCGUGgG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 147736 | 0.66 | 0.647191 |
Target: 5'- -gCAcCGCCCGCGAgccaaCCCGUAUCCu -3' miRNA: 3'- gaGUaGCGGGCGCUgcc--GGGCGUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 118995 | 0.66 | 0.656872 |
Target: 5'- ---cUgGCCCGCGagauagucgcGCGGCUgGuCGCCCg -3' miRNA: 3'- gaguAgCGGGCGC----------UGCCGGgC-GUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 86733 | 0.66 | 0.656872 |
Target: 5'- -aCAuUUGUCCGCGA-GGCCgGCGCgCu -3' miRNA: 3'- gaGU-AGCGGGCGCUgCCGGgCGUGgG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 83343 | 0.66 | 0.656872 |
Target: 5'- -cCAuUCGgCCGCGGCGucGCCCGCGaaCa -3' miRNA: 3'- gaGU-AGCgGGCGCUGC--CGGGCGUggG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 75337 | 0.66 | 0.656872 |
Target: 5'- aUCAaCGCCCu--GCGGUcgCCGUACCCg -3' miRNA: 3'- gAGUaGCGGGcgcUGCCG--GGCGUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 33630 | 0.66 | 0.656872 |
Target: 5'- ----cCGCCC-CGGCGcccaccccGCCCGCACaCCu -3' miRNA: 3'- gaguaGCGGGcGCUGC--------CGGGCGUG-GG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 27755 | 0.66 | 0.656872 |
Target: 5'- -----gGCCCGCaacACGGCCCGgGCUg -3' miRNA: 3'- gaguagCGGGCGc--UGCCGGGCgUGGg -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 25250 | 0.66 | 0.656872 |
Target: 5'- ----cCGaCCCGCagGGCGGCUgGCGCCg -3' miRNA: 3'- gaguaGC-GGGCG--CUGCCGGgCGUGGg -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 15124 | 0.66 | 0.656872 |
Target: 5'- gUCGUCGUCCuCGGgGGguucgccgucCCCGgCGCCCu -3' miRNA: 3'- gAGUAGCGGGcGCUgCC----------GGGC-GUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 146980 | 0.66 | 0.65397 |
Target: 5'- uUCcgCGCCUcCGAgGGUCCGCcucuugccucggggACCCc -3' miRNA: 3'- gAGuaGCGGGcGCUgCCGGGCG--------------UGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 19133 | 0.66 | 0.652034 |
Target: 5'- uUCAUCGCCacgaagaccaacgaCGCGugGGUgggggaaCCGUggccccuGCCCg -3' miRNA: 3'- gAGUAGCGG--------------GCGCugCCG-------GGCG-------UGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 131338 | 0.66 | 0.647191 |
Target: 5'- -cCcgCGCCCcgggcGCGAC-GUCgGCGCCCg -3' miRNA: 3'- gaGuaGCGGG-----CGCUGcCGGgCGUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 93743 | 0.66 | 0.647191 |
Target: 5'- -aCGaCGCUgaUGCGGCugcgGGCCCGcCACCCc -3' miRNA: 3'- gaGUaGCGG--GCGCUG----CCGGGC-GUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 80171 | 0.66 | 0.647191 |
Target: 5'- uUCGUccagCGCCUGaccccgcauccCGAC-GCCCGCAUCCg -3' miRNA: 3'- gAGUA----GCGGGC-----------GCUGcCGGGCGUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 31564 | 0.66 | 0.647191 |
Target: 5'- --aGUCGUCgG-GGCGcGCCgCGCGCCCc -3' miRNA: 3'- gagUAGCGGgCgCUGC-CGG-GCGUGGG- -5' |
|||||||
5161 | 5' | -62.4 | NC_001798.1 | + | 4711 | 0.66 | 0.647191 |
Target: 5'- -aCGcCGUCCGCGGCaGGCUCGUcgacgGCCUc -3' miRNA: 3'- gaGUaGCGGGCGCUG-CCGGGCG-----UGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home