miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 121610 0.66 0.68578
Target:  5'- gCUCGUccCGCCaaacacgcgauaCGCggccGACGGCgCGCGCCUc -3'
miRNA:   3'- -GAGUA--GCGG------------GCG----CUGCCGgGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 153013 0.66 0.68578
Target:  5'- --gGUCGCCgG-GGCGGaguCCGgGCCCg -3'
miRNA:   3'- gagUAGCGGgCgCUGCCg--GGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 1913 0.66 0.68578
Target:  5'- aCUCcacggCGCCgGCGAaGGCCaGguCCCg -3'
miRNA:   3'- -GAGua---GCGGgCGCUgCCGGgCguGGG- -5'
5161 5' -62.4 NC_001798.1 + 92497 0.66 0.68578
Target:  5'- uUCAcggCGgCCGCcACcuGGCCCccaGCACCCa -3'
miRNA:   3'- gAGUa--GCgGGCGcUG--CCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 94021 0.66 0.68578
Target:  5'- aUUAUCGgcaaCCGCGA-GGCCCuGCACa- -3'
miRNA:   3'- gAGUAGCg---GGCGCUgCCGGG-CGUGgg -5'
5161 5' -62.4 NC_001798.1 + 147899 0.66 0.682902
Target:  5'- gUCGUCGUUcccgggggggcaggCGCGGgucgGGCCCGUacGCCCa -3'
miRNA:   3'- gAGUAGCGG--------------GCGCUg---CCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 68201 0.66 0.676174
Target:  5'- -cCGUCGUCaauagacgaucaCGCG-CaGGCCCGcCACCCc -3'
miRNA:   3'- gaGUAGCGG------------GCGCuG-CCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 52975 0.66 0.666536
Target:  5'- -----gGCgCGCGaccgggcuggGCGGCCCGCcacGCCCa -3'
miRNA:   3'- gaguagCGgGCGC----------UGCCGGGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 134635 0.66 0.666536
Target:  5'- gUCGagGUgUGCGAgguCGGCCUGCgGCCCc -3'
miRNA:   3'- gAGUagCGgGCGCU---GCCGGGCG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 138701 0.66 0.666536
Target:  5'- --aGUCGaaCGCGACGGCCagaucagaaGC-CCCg -3'
miRNA:   3'- gagUAGCggGCGCUGCCGGg--------CGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 78753 0.66 0.666536
Target:  5'- gCUCGacgUGCCCGCGGuuaucUGGCUagaGCacGCCCa -3'
miRNA:   3'- -GAGUa--GCGGGCGCU-----GCCGGg--CG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 35590 0.66 0.675211
Target:  5'- gCUCGgcugCGgCCGCGggcuccgGgGGCuCCGCACUCu -3'
miRNA:   3'- -GAGUa---GCgGGCGC-------UgCCG-GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 28976 0.66 0.675211
Target:  5'- gCUC--CGCCCGCcccagggGGCGGCgccggccaaCCGCGCgCCg -3'
miRNA:   3'- -GAGuaGCGGGCG-------CUGCCG---------GGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 471 0.66 0.676174
Target:  5'- ---cUCcCCCGCGGCcgccuccCCCGCGCCCc -3'
miRNA:   3'- gaguAGcGGGCGCUGcc-----GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 67131 0.66 0.676174
Target:  5'- uCUCggCGCCgccccuggcauCGCGACGGgCgcaGCACUCg -3'
miRNA:   3'- -GAGuaGCGG-----------GCGCUGCCgGg--CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 25398 0.66 0.676174
Target:  5'- cCUCAuguUCGaCCCGCGcgcgcuggccucGCuGGCCgCGCGCUg -3'
miRNA:   3'- -GAGU---AGC-GGGCGC------------UG-CCGG-GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 33742 0.66 0.676174
Target:  5'- aCUCAccccacccCGCCCGC-ACaccuGCCCGCcacGCCCg -3'
miRNA:   3'- -GAGUa-------GCGGGCGcUGc---CGGGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 69526 0.66 0.676174
Target:  5'- -gCGUgGCCCGCGA--GCUCGCGCg- -3'
miRNA:   3'- gaGUAgCGGGCGCUgcCGGGCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 86466 0.66 0.676174
Target:  5'- uUCGUgaGCCUGCuuCGGgCCGCggGCCCc -3'
miRNA:   3'- gAGUAg-CGGGCGcuGCCgGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 104748 0.66 0.676174
Target:  5'- uCUCGUCGCCgauuacCG-CGGCCagaCGCGCCa -3'
miRNA:   3'- -GAGUAGCGGgc----GCuGCCGG---GCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.