miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5162 3' -52.8 NC_001798.1 + 49711 0.68 0.940023
Target:  5'- -cUGGCGCCaguuGGCGUGUcuGUUucAGCCc -3'
miRNA:   3'- ccACCGCGG----CCGUACA--UAAuaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 26524 0.68 0.940023
Target:  5'- cGGcgGGCGgCGGCGUGgag-GUGGUgGg -3'
miRNA:   3'- -CCa-CCGCgGCCGUACauaaUAUCGgC- -5'
5162 3' -52.8 NC_001798.1 + 132600 0.68 0.929942
Target:  5'- uGGUGaGCGCCaGCGggca--GUGGCCGg -3'
miRNA:   3'- -CCAC-CGCGGcCGUacauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 113656 0.68 0.926178
Target:  5'- gGGUGGCGgCGGCGgacugcuuuGCCGc -3'
miRNA:   3'- -CCACCGCgGCCGUacauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 4399 0.68 0.924528
Target:  5'- uGGUGGUGUCGGCggGgc-----GCCGg -3'
miRNA:   3'- -CCACCGCGGCCGuaCauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 96707 0.69 0.918865
Target:  5'- uGGUGGCGgCGGUggGg--UcgGGCCu -3'
miRNA:   3'- -CCACCGCgGCCGuaCauaAuaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 20339 0.69 0.917702
Target:  5'- aGGUGGCGCaGGCG-GUuggcgcuGCCGg -3'
miRNA:   3'- -CCACCGCGgCCGUaCAuaauau-CGGC- -5'
5162 3' -52.8 NC_001798.1 + 150845 0.69 0.915348
Target:  5'- aGGgGGCGCCGGUcgGgucgcggcgGGCUGg -3'
miRNA:   3'- -CCaCCGCGGCCGuaCauaaua---UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 111307 0.69 0.910519
Target:  5'- cGUGGCGCUGG-AUGUAccgaccgacgAGCCGc -3'
miRNA:   3'- cCACCGCGGCCgUACAUaaua------UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 36487 0.69 0.902338
Target:  5'- aGGgGGCGCCGGCGcgacgcgggcGGCCGg -3'
miRNA:   3'- -CCaCCGCGGCCGUacauaaua--UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 111000 0.69 0.893746
Target:  5'- --aGGCGCgCGGUAUGc---GUGGCCGc -3'
miRNA:   3'- ccaCCGCG-GCCGUACauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 85997 0.69 0.893746
Target:  5'- cGG-GGCGCUGGCGcagGgggGUg--AGCCGg -3'
miRNA:   3'- -CCaCCGCGGCCGUa--Ca--UAauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 151602 0.7 0.886862
Target:  5'- -cUGGCGCuCGGCcgGgggccgGGCCGg -3'
miRNA:   3'- ccACCGCG-GCCGuaCauaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 39876 0.7 0.870148
Target:  5'- cGGgGGUGCCGGCGUccucggggcgGGCCGg -3'
miRNA:   3'- -CCaCCGCGGCCGUAcauaaua---UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 102504 0.71 0.849031
Target:  5'- cGGgccGGCGCCGGgGUGUccguaGGCCa -3'
miRNA:   3'- -CCa--CCGCGGCCgUACAuaauaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 104906 0.71 0.840823
Target:  5'- aGUGGCGCUGGCccacg-UAcAGCCGg -3'
miRNA:   3'- cCACCGCGGCCGuacauaAUaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 98584 0.72 0.797901
Target:  5'- cGGUGGCGUCGGCGgccccggcGGCCc -3'
miRNA:   3'- -CCACCGCGGCCGUacauaauaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 115874 0.72 0.778298
Target:  5'- -aUGGCGCCGGCuacc---AUAGCCGc -3'
miRNA:   3'- ccACCGCGGCCGuacauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 74404 0.72 0.761984
Target:  5'- cGUGGCGCCGGCGgaccugaccGCCGc -3'
miRNA:   3'- cCACCGCGGCCGUacauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 50108 0.75 0.636586
Target:  5'- uGGUGGCGCCGcGCAUGUcgUuucucuCCGc -3'
miRNA:   3'- -CCACCGCGGC-CGUACAuaAuauc--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.