miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5162 5' -53.5 NC_001798.1 + 9774 0.66 0.970551
Target:  5'- cGCCgcggUGCUGaugGUCAUGUGGCcccaGGCGUGg -3'
miRNA:   3'- -CGG----AUGAUa--CAGUGCACCGa---CCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 76167 0.66 0.970551
Target:  5'- aGCCacgACUGUcgguuUCACGUGGCcucGGcCGCGg -3'
miRNA:   3'- -CGGa--UGAUAc----AGUGCACCGa--CC-GUGC- -5'
5162 5' -53.5 NC_001798.1 + 113305 0.66 0.964252
Target:  5'- aGCC-GCUGgagCugGUGGCcgcgGGCAUGu -3'
miRNA:   3'- -CGGaUGAUacaGugCACCGa---CCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 122202 0.66 0.960773
Target:  5'- aGCCgcgaucGCUG-GUCGaGUGGCUGGacCGCGg -3'
miRNA:   3'- -CGGa-----UGAUaCAGUgCACCGACC--GUGC- -5'
5162 5' -53.5 NC_001798.1 + 149677 0.66 0.957067
Target:  5'- gGCCccggGCUcgGggccgcccUCGCGUGGCgcgucuuccUGGCACa -3'
miRNA:   3'- -CGGa---UGAuaC--------AGUGCACCG---------ACCGUGc -5'
5162 5' -53.5 NC_001798.1 + 118997 0.67 0.948953
Target:  5'- gGCCcGCgagAUaGUCGCGcGGCUGGuCGCc -3'
miRNA:   3'- -CGGaUGa--UA-CAGUGCaCCGACC-GUGc -5'
5162 5' -53.5 NC_001798.1 + 77792 0.67 0.944538
Target:  5'- cGCCUGCag-G-CGC-UGGCgGGCACGc -3'
miRNA:   3'- -CGGAUGauaCaGUGcACCGaCCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 139148 0.68 0.929831
Target:  5'- cGCCUGCagcUGUCGgGUGGCggccucGCugGa -3'
miRNA:   3'- -CGGAUGau-ACAGUgCACCGac----CGugC- -5'
5162 5' -53.5 NC_001798.1 + 134045 0.68 0.929831
Target:  5'- cCCUGCUGuaucuggucUGUCGCGacgccgcggGGgaGGCGCGc -3'
miRNA:   3'- cGGAUGAU---------ACAGUGCa--------CCgaCCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 100704 0.68 0.918793
Target:  5'- cGCC-GCcAUGuUCGCGgGGCUGuGCGCGu -3'
miRNA:   3'- -CGGaUGaUAC-AGUGCaCCGAC-CGUGC- -5'
5162 5' -53.5 NC_001798.1 + 80252 0.68 0.900396
Target:  5'- gGCCUcCUGUucggCACGcGGCUGGC-CGa -3'
miRNA:   3'- -CGGAuGAUAca--GUGCaCCGACCGuGC- -5'
5162 5' -53.5 NC_001798.1 + 24818 0.69 0.89378
Target:  5'- cGCCUGCgcgGggaccugCGCGUGGCcGGCggcaGCGa -3'
miRNA:   3'- -CGGAUGauaCa------GUGCACCGaCCG----UGC- -5'
5162 5' -53.5 NC_001798.1 + 136998 0.69 0.87253
Target:  5'- gGCCagGCUGUG-CACGUGGUccucguUGGC-CGu -3'
miRNA:   3'- -CGGa-UGAUACaGUGCACCG------ACCGuGC- -5'
5162 5' -53.5 NC_001798.1 + 44019 0.69 0.864995
Target:  5'- gGCCUGCagaucgUACGUGGCUccGGCGCc -3'
miRNA:   3'- -CGGAUGauaca-GUGCACCGA--CCGUGc -5'
5162 5' -53.5 NC_001798.1 + 26308 0.7 0.857244
Target:  5'- cGCCgcUGCggcccGUCuACGUGGCgcuggGGCGCGa -3'
miRNA:   3'- -CGG--AUGaua--CAG-UGCACCGa----CCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 111812 0.71 0.769419
Target:  5'- cGCCg-----GUCGCGggcguccaggGGCUGGCGCGg -3'
miRNA:   3'- -CGGaugauaCAGUGCa---------CCGACCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 119365 0.72 0.759791
Target:  5'- cGCUUuacgaggcGCUG-GUCGCcUGGCUGGCGCa -3'
miRNA:   3'- -CGGA--------UGAUaCAGUGcACCGACCGUGc -5'
5162 5' -53.5 NC_001798.1 + 86295 0.73 0.699913
Target:  5'- uGCCUGCUGUG-CAaucUGUuGCUGGUGCGg -3'
miRNA:   3'- -CGGAUGAUACaGU---GCAcCGACCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 45125 0.73 0.689671
Target:  5'- cGCCUGCaugGUCAaccucgaGaGGCUGGCGCGc -3'
miRNA:   3'- -CGGAUGauaCAGUg------CaCCGACCGUGC- -5'
5162 5' -53.5 NC_001798.1 + 27463 0.73 0.689671
Target:  5'- aGCCUGCUAguccccguccUGcCGCGcgggGGCgGGCGCGg -3'
miRNA:   3'- -CGGAUGAU----------ACaGUGCa---CCGaCCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.