miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5163 5' -64.1 NC_001798.1 + 25462 0.66 0.581099
Target:  5'- ---gGCGCGCcCGCcgccuucggcccgcuGCGCGCCUCGGg -3'
miRNA:   3'- agagCGCGCGcGUG---------------CGCGUGGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 52427 0.66 0.577269
Target:  5'- --gCGCGgcCGUGUACGCGCugcacacgGCCCUGGc -3'
miRNA:   3'- agaGCGC--GCGCGUGCGCG--------UGGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 130215 0.66 0.577269
Target:  5'- gCUCGCGUaggGgGUuucCGCGUAgCCCGGg -3'
miRNA:   3'- aGAGCGCG---CgCGu--GCGCGUgGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 133774 0.66 0.577269
Target:  5'- gCUUGCGCaCGCACGCcuccgGCGCCCa--- -3'
miRNA:   3'- aGAGCGCGcGCGUGCG-----CGUGGGgcca -5'
5163 5' -64.1 NC_001798.1 + 20329 0.66 0.577269
Target:  5'- gUCUCGCaccaggugGCGCaggcgGUugGCGCugCCgGGc -3'
miRNA:   3'- -AGAGCG--------CGCG-----CGugCGCGugGGgCCa -5'
5163 5' -64.1 NC_001798.1 + 87364 0.66 0.577269
Target:  5'- uUUUCGUGCacacgauccuGCGCggaggggggGCGUGCGacCCCCGGUu -3'
miRNA:   3'- -AGAGCGCG----------CGCG---------UGCGCGU--GGGGCCA- -5'
5163 5' -64.1 NC_001798.1 + 109616 0.66 0.577269
Target:  5'- uUCUCG-GCGgcCGCGCGCuaacCGCCCCGa- -3'
miRNA:   3'- -AGAGCgCGC--GCGUGCGc---GUGGGGCca -5'
5163 5' -64.1 NC_001798.1 + 128290 0.66 0.577269
Target:  5'- cUCUgGCGCcugacGCGC-CGCGCcCCCCcGUc -3'
miRNA:   3'- -AGAgCGCG-----CGCGuGCGCGuGGGGcCA- -5'
5163 5' -64.1 NC_001798.1 + 7622 0.66 0.56772
Target:  5'- aCUCGCGgcacCGCGCGgacCG-GC-CCCCGGa -3'
miRNA:   3'- aGAGCGC----GCGCGU---GCgCGuGGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 106358 0.66 0.56772
Target:  5'- gUUCGCGUuuGCugGcCGUGuCCCCGGa -3'
miRNA:   3'- aGAGCGCGcgCGugC-GCGU-GGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 135706 0.66 0.56772
Target:  5'- cUCUcCGCGgG-GC-CGCGUACgCCCGGc -3'
miRNA:   3'- -AGA-GCGCgCgCGuGCGCGUG-GGGCCa -5'
5163 5' -64.1 NC_001798.1 + 149254 0.66 0.56772
Target:  5'- -gUCGCcgGCcgGCGCGgGCGCGCCCUGc- -3'
miRNA:   3'- agAGCG--CG--CGCGUgCGCGUGGGGCca -5'
5163 5' -64.1 NC_001798.1 + 88828 0.66 0.56772
Target:  5'- --aCGCGCGCGuCGCGaggaGCAUCUCGcGg -3'
miRNA:   3'- agaGCGCGCGC-GUGCg---CGUGGGGC-Ca -5'
5163 5' -64.1 NC_001798.1 + 135343 0.66 0.56772
Target:  5'- --aCGCGUGCGaCGCcugcccCGCGCUCCGGc -3'
miRNA:   3'- agaGCGCGCGC-GUGc-----GCGUGGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 92558 0.66 0.56201
Target:  5'- --gCGgGCGCGCccgcauuuuggcuucGCGgacuaCGCGCCCCGGc -3'
miRNA:   3'- agaGCgCGCGCG---------------UGC-----GCGUGGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 45085 0.66 0.558212
Target:  5'- ---gGCGCcuCGUgaagGCGCGCGCCCUGGc -3'
miRNA:   3'- agagCGCGc-GCG----UGCGCGUGGGGCCa -5'
5163 5' -64.1 NC_001798.1 + 100398 0.66 0.558212
Target:  5'- --cCGCGaCGCGCucgagcCGUGCACCgUGGg -3'
miRNA:   3'- agaGCGC-GCGCGu-----GCGCGUGGgGCCa -5'
5163 5' -64.1 NC_001798.1 + 84976 0.66 0.558212
Target:  5'- -aUCGCGUcccguaacguucGCGgaCGCGUGCGCCCCGc- -3'
miRNA:   3'- agAGCGCG------------CGC--GUGCGCGUGGGGCca -5'
5163 5' -64.1 NC_001798.1 + 3419 0.66 0.557263
Target:  5'- uUCUCGCGCGCcagcagggGCGCGUaggcgcgGCGCaggCUGGUc -3'
miRNA:   3'- -AGAGCGCGCG--------CGUGCG-------CGUGg--GGCCA- -5'
5163 5' -64.1 NC_001798.1 + 15519 0.66 0.557263
Target:  5'- uUUUCGCugcggagGCGCuGCugGUGUucgugugcccgGCCCCGGg -3'
miRNA:   3'- -AGAGCG-------CGCG-CGugCGCG-----------UGGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.