miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5164 5' -60.2 NC_001798.1 + 149664 0.66 0.78704
Target:  5'- gCGcCGGGuCGCGGGcccCGgGCucgGGGCCGc -3'
miRNA:   3'- -GCaGCCC-GCGCCCuu-GCaUG---UCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 98556 0.66 0.78704
Target:  5'- gCGcUGGuCGUGGGGGCGcUGguGGCCGc -3'
miRNA:   3'- -GCaGCCcGCGCCCUUGC-AUguCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 14988 0.66 0.786162
Target:  5'- -cUUGGGCGgGGGGGCGaggcgugUugGGGgCGa -3'
miRNA:   3'- gcAGCCCGCgCCCUUGC-------AugUCCgGC- -5'
5164 5' -60.2 NC_001798.1 + 44850 0.66 0.778196
Target:  5'- gGUgGGGUGgGGGAAagcCGgcGCAGaGCCGc -3'
miRNA:   3'- gCAgCCCGCgCCCUU---GCa-UGUC-CGGC- -5'
5164 5' -60.2 NC_001798.1 + 112831 0.66 0.778196
Target:  5'- gCGUCaGGGCGUGGGugugaauuucgGGgGUucCGGGCCc -3'
miRNA:   3'- -GCAG-CCCGCGCCC-----------UUgCAu-GUCCGGc -5'
5164 5' -60.2 NC_001798.1 + 3782 0.66 0.778196
Target:  5'- --aCGGGCGCcGGGGCGcccgAGGCCu -3'
miRNA:   3'- gcaGCCCGCGcCCUUGCaug-UCCGGc -5'
5164 5' -60.2 NC_001798.1 + 12327 0.66 0.778196
Target:  5'- gGcCGGGCauacCGGGAuCGgACGGGUCGa -3'
miRNA:   3'- gCaGCCCGc---GCCCUuGCaUGUCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 125653 0.66 0.778196
Target:  5'- uCG-CGGGCgagGCGGGGGCGgcugAGGUCa -3'
miRNA:   3'- -GCaGCCCG---CGCCCUUGCaug-UCCGGc -5'
5164 5' -60.2 NC_001798.1 + 78128 0.66 0.777305
Target:  5'- cCGUgGGGCGCcuGGcggacgacaugacGAGCGUGCccGGCCu -3'
miRNA:   3'- -GCAgCCCGCG--CC-------------CUUGCAUGu-CCGGc -5'
5164 5' -60.2 NC_001798.1 + 130789 0.66 0.769232
Target:  5'- gCGUCGGcGC-CGGGucaau-CAGGCCGu -3'
miRNA:   3'- -GCAGCC-CGcGCCCuugcauGUCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 3435 0.66 0.769232
Target:  5'- ---gGGGCGCGuaGGcGCGgcGCAGGCUGg -3'
miRNA:   3'- gcagCCCGCGC--CCuUGCa-UGUCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 26372 0.66 0.769232
Target:  5'- gCG-CGGGCcgcgGCGGGAguucuGCGcGCGGGCg- -3'
miRNA:   3'- -GCaGCCCG----CGCCCU-----UGCaUGUCCGgc -5'
5164 5' -60.2 NC_001798.1 + 36619 0.66 0.769232
Target:  5'- ---nGGGCGgGGGcGCGcgGC-GGCCGg -3'
miRNA:   3'- gcagCCCGCgCCCuUGCa-UGuCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 53102 0.66 0.769232
Target:  5'- aCGcCGGGCGCGcGGcGCGaGCucccugcGGCUGg -3'
miRNA:   3'- -GCaGCCCGCGC-CCuUGCaUGu------CCGGC- -5'
5164 5' -60.2 NC_001798.1 + 63715 0.66 0.760156
Target:  5'- gGcCGGGUGguuGAugGUGCGGGCCa -3'
miRNA:   3'- gCaGCCCGCgccCUugCAUGUCCGGc -5'
5164 5' -60.2 NC_001798.1 + 58692 0.66 0.760156
Target:  5'- cCGUCaGGGcCGCGGcGGCGcGgGGGUCGa -3'
miRNA:   3'- -GCAG-CCC-GCGCCcUUGCaUgUCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 34852 0.66 0.760156
Target:  5'- cCGcCGGGCG-GGGGACGccuuccgccCGGcGCCGg -3'
miRNA:   3'- -GCaGCCCGCgCCCUUGCau-------GUC-CGGC- -5'
5164 5' -60.2 NC_001798.1 + 97635 0.66 0.760156
Target:  5'- aCG-CGGGCcgccgcggacguGCGGGAGCGccgGC-GGCUGu -3'
miRNA:   3'- -GCaGCCCG------------CGCCCUUGCa--UGuCCGGC- -5'
5164 5' -60.2 NC_001798.1 + 49407 0.66 0.757412
Target:  5'- uG-CGGGCGCGGGAGgagagcuaccggacCGUGuuGGCa- -3'
miRNA:   3'- gCaGCCCGCGCCCUU--------------GCAUguCCGgc -5'
5164 5' -60.2 NC_001798.1 + 129301 0.66 0.754659
Target:  5'- gCG-CGGGCGCGGaggaGGGCGUgACGuuccgccuggaggacGGCCGc -3'
miRNA:   3'- -GCaGCCCGCGCC----CUUGCA-UGU---------------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.