miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 151614 0.66 0.954409
Target:  5'- cGgGGGCCGGGCcGGgGGcguGGCcGCGu -3'
miRNA:   3'- -CgCUCGGUCCGuUUgCCau-UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 151160 0.66 0.954409
Target:  5'- cCGuGCCGGGCcacgGGGgGGUGGGCgacagGGCGc -3'
miRNA:   3'- cGCuCGGUCCG----UUUgCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 135257 0.66 0.954409
Target:  5'- gGCGGGCCuggaaAGGCuGGACGcgcuGGUGGCGg -3'
miRNA:   3'- -CGCUCGG-----UCCG-UUUGCcau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 27796 0.66 0.954409
Target:  5'- gGUGAguucGCUAGGCAAgcACGGacuGGCGGUu -3'
miRNA:   3'- -CGCU----CGGUCCGUU--UGCCau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 16050 0.66 0.954409
Target:  5'- aGCGAcGCguGGUAGGuCGcuggGGGCGGCGg -3'
miRNA:   3'- -CGCU-CGguCCGUUU-GCca--UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1752 0.66 0.954409
Target:  5'- cGCcGGCCAGcGCAcggcgcacugcACGGcGGGCAGCa -3'
miRNA:   3'- -CGcUCGGUC-CGUu----------UGCCaUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 124327 0.66 0.951981
Target:  5'- cGUGGGCCGGGaCGGcGCGGaAAGCgucauccgcccgaccAGCGc -3'
miRNA:   3'- -CGCUCGGUCC-GUU-UGCCaUUCG---------------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 75122 0.66 0.945984
Target:  5'- cGC-AGuCCGGGCA---GGgcGGCGGCGa -3'
miRNA:   3'- -CGcUC-GGUCCGUuugCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 97636 0.66 0.945984
Target:  5'- cGCGGGCCGccGCGGACGuGcggGAGCgccGGCGg -3'
miRNA:   3'- -CGCUCGGUc-CGUUUGC-Ca--UUCG---UCGC- -5'
5165 3' -54.3 NC_001798.1 + 60746 0.66 0.950315
Target:  5'- aGCGAGUCcaaaAGGCucguGCG--AAGCGGCGc -3'
miRNA:   3'- -CGCUCGG----UCCGuu--UGCcaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 64141 0.66 0.950315
Target:  5'- aGgGGGUCGGuGCucGCGGggGAGaCGGCGg -3'
miRNA:   3'- -CgCUCGGUC-CGuuUGCCa-UUC-GUCGC- -5'
5165 3' -54.3 NC_001798.1 + 9658 0.66 0.950315
Target:  5'- aGCGGGCCGcGC--GCGGaGGGC-GCGg -3'
miRNA:   3'- -CGCUCGGUcCGuuUGCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 43743 0.66 0.951981
Target:  5'- aGUGGGCCAGGUAGauGuacguaaugaauuccCGGUcggacacgcgcAGGCAGCu -3'
miRNA:   3'- -CGCUCGGUCCGUU--U---------------GCCA-----------UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 66621 0.67 0.926229
Target:  5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3'
miRNA:   3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 34958 0.67 0.926229
Target:  5'- cGCGGcGCCGGaGgGGGCGGccgccGAGguGCGg -3'
miRNA:   3'- -CGCU-CGGUC-CgUUUGCCa----UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 97565 0.67 0.926229
Target:  5'- cGCGAGCgAGG---ACGGgGAGC-GCGg -3'
miRNA:   3'- -CGCUCGgUCCguuUGCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 54020 0.67 0.931535
Target:  5'- uGgGAGaCC-GGCAAGCGc--AGCGGCGg -3'
miRNA:   3'- -CgCUC-GGuCCGUUUGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1926 0.67 0.931535
Target:  5'- gGCGAagGCCAGGUcccGCGuGgacAGCAGCa -3'
miRNA:   3'- -CGCU--CGGUCCGuu-UGC-Cau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 27302 0.67 0.931535
Target:  5'- cGCGAGCUcGGCGGGauggaggggaGGgaggGGGUGGCGg -3'
miRNA:   3'- -CGCUCGGuCCGUUUg---------CCa---UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 66367 0.67 0.926229
Target:  5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3'
miRNA:   3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.