miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 31040 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 97756 0.67 0.920676
Target:  5'- uGCGGGUCAGcGUccACGGcGAGguGCu -3'
miRNA:   3'- -CGCUCGGUC-CGuuUGCCaUUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 1793 0.67 0.920676
Target:  5'- cGCaGGCCAGGUAGGCGugcuGCcGCGa -3'
miRNA:   3'- -CGcUCGGUCCGUUUGCcauuCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 152291 0.67 0.920676
Target:  5'- aUGAGCCGGGguAG-GGUAgacucgagacGGCGGCc -3'
miRNA:   3'- cGCUCGGUCCguUUgCCAU----------UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 4049 0.67 0.922926
Target:  5'- cGCGGGCCcGGCGGcgcuccaggcggcccGCGGUcgccGCGGgGg -3'
miRNA:   3'- -CGCUCGGuCCGUU---------------UGCCAuu--CGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 15040 0.67 0.926229
Target:  5'- cGgGAGCgugGGGCGGAUGGgcccgGGGCGcGCGg -3'
miRNA:   3'- -CgCUCGg--UCCGUUUGCCa----UUCGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 30974 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 31007 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 28821 0.68 0.889256
Target:  5'- cGCGGGcCCGGGCcgucGGGCGGUcuaGGGUugaaccGGCGa -3'
miRNA:   3'- -CGCUC-GGUCCG----UUUGCCA---UUCG------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 88045 0.68 0.894686
Target:  5'- gGCaGGGCCgcuGGGgGGGCGGgcucguccccugGGGCGGCGg -3'
miRNA:   3'- -CG-CUCGG---UCCgUUUGCCa-----------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29140 0.68 0.895354
Target:  5'- aUGGGCCGGcguucccGCucGCGGUAauuAGCAGCu -3'
miRNA:   3'- cGCUCGGUC-------CGuuUGCCAU---UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 31761 0.68 0.89602
Target:  5'- cUGGGCCGGGCAGGCGcGaccgacGCGcGCGg -3'
miRNA:   3'- cGCUCGGUCCGUUUGC-Cauu---CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 32236 0.68 0.89602
Target:  5'- uGCGGGCgGGGC---UGGUGGG-AGCGu -3'
miRNA:   3'- -CGCUCGgUCCGuuuGCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 111884 0.68 0.89602
Target:  5'- aGCGAGCuCGGGagc-CGGggGAGguGCGc -3'
miRNA:   3'- -CGCUCG-GUCCguuuGCCa-UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 115709 0.68 0.89602
Target:  5'- cGCGGGCguGGCcGACGucGAGCuucccGGCGg -3'
miRNA:   3'- -CGCUCGguCCGuUUGCcaUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 146027 0.68 0.89602
Target:  5'- --cAGCCaAGGC--GCGGUGGGgGGCGu -3'
miRNA:   3'- cgcUCGG-UCCGuuUGCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 150562 0.68 0.89602
Target:  5'- aGCG-GCCcgGGGCccGCGG--GGCGGCGc -3'
miRNA:   3'- -CGCuCGG--UCCGuuUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 5909 0.68 0.89602
Target:  5'- cCGAGgCGGGCccGGACGGggGGCGGg- -3'
miRNA:   3'- cGCUCgGUCCG--UUUGCCauUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 68471 0.68 0.89602
Target:  5'- uGCGAGCuCGcGGCcgGGACGGcGAGCGGa- -3'
miRNA:   3'- -CGCUCG-GU-CCG--UUUGCCaUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 26352 0.68 0.889256
Target:  5'- cGCGgcGGCCcGGCGGagcugcGCGGgccGCGGCGg -3'
miRNA:   3'- -CGC--UCGGuCCGUU------UGCCauuCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.