miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 68471 0.68 0.89602
Target:  5'- uGCGAGCuCGcGGCcgGGACGGcGAGCGGa- -3'
miRNA:   3'- -CGCUCG-GU-CCG--UUUGCCaUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 5909 0.68 0.89602
Target:  5'- cCGAGgCGGGCccGGACGGggGGCGGg- -3'
miRNA:   3'- cGCUCgGUCCG--UUUGCCauUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 150562 0.68 0.89602
Target:  5'- aGCG-GCCcgGGGCccGCGG--GGCGGCGc -3'
miRNA:   3'- -CGCuCGG--UCCGuuUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 146027 0.68 0.89602
Target:  5'- --cAGCCaAGGC--GCGGUGGGgGGCGu -3'
miRNA:   3'- cgcUCGG-UCCGuuUGCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 115709 0.68 0.89602
Target:  5'- cGCGGGCguGGCcGACGucGAGCuucccGGCGg -3'
miRNA:   3'- -CGCUCGguCCGuUUGCcaUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 111884 0.68 0.89602
Target:  5'- aGCGAGCuCGGGagc-CGGggGAGguGCGc -3'
miRNA:   3'- -CGCUCG-GUCCguuuGCCa-UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 32236 0.68 0.89602
Target:  5'- uGCGGGCgGGGC---UGGUGGG-AGCGu -3'
miRNA:   3'- -CGCUCGgUCCGuuuGCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 31761 0.68 0.89602
Target:  5'- cUGGGCCGGGCAGGCGcGaccgacGCGcGCGg -3'
miRNA:   3'- cGCUCGGUCCGUUUGC-Cauu---CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 84050 0.69 0.834831
Target:  5'- cGCGAGCUgcacccgGGGCAuGCGcacaAAGCAGCu -3'
miRNA:   3'- -CGCUCGG-------UCCGUuUGCca--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 28646 0.69 0.832303
Target:  5'- aGCGGGCCGaccGCGAcCGGUuccggcgccgcguGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUc--CGUUuGCCAu------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1836 0.69 0.830608
Target:  5'- gGCGGGCCAguccgcggcgcgcacGGCGuugacGACGaugAGGCGGCGg -3'
miRNA:   3'- -CGCUCGGU---------------CCGU-----UUGCca-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 69476 0.69 0.827197
Target:  5'- cCGGGCCGucgcGGCGAGCGaUGGGCGGgCGc -3'
miRNA:   3'- cGCUCGGU----CCGUUUGCcAUUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 29900 0.69 0.827197
Target:  5'- uGCGGGUUGGggguggucGCGGGCGGUGGGCucgggGGCGg -3'
miRNA:   3'- -CGCUCGGUC--------CGUUUGCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 1477 0.69 0.843953
Target:  5'- gGCGcGCCGGGCGccAugGcGUcgcccgcgcccgAGGCGGCGg -3'
miRNA:   3'- -CGCuCGGUCCGU--UugC-CA------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 3106 0.69 0.843953
Target:  5'- gGCG-GCCAGGCAcuccACGGccacGCGGCc -3'
miRNA:   3'- -CGCuCGGUCCGUu---UGCCauu-CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 151776 0.69 0.843953
Target:  5'- uUGAGCauccccCAGGCGuGCGG--GGCGGCGg -3'
miRNA:   3'- cGCUCG------GUCCGUuUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2424 0.69 0.852037
Target:  5'- gGCGuguGGCUGGGCcccGGCGGcuGGCGGCGc -3'
miRNA:   3'- -CGC---UCGGUCCGu--UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 9926 0.69 0.852037
Target:  5'- uGCGAGCCucGGCAAAacauc-GCGGCGg -3'
miRNA:   3'- -CGCUCGGu-CCGUUUgccauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29817 0.69 0.852037
Target:  5'- aGCGGccGCCGcGGCAGacccccggcACGGUGAGagGGCGa -3'
miRNA:   3'- -CGCU--CGGU-CCGUU---------UGCCAUUCg-UCGC- -5'
5165 3' -54.3 NC_001798.1 + 96031 0.69 0.827197
Target:  5'- gGCGGGgCGGGCGGGCGGgcgacGGGCAu-- -3'
miRNA:   3'- -CGCUCgGUCCGUUUGCCa----UUCGUcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.