miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 121696 0.69 0.858357
Target:  5'- uGgGGGCCGcGGCucccgccgccgcGACGG-AGGCGGCGg -3'
miRNA:   3'- -CgCUCGGU-CCGu-----------UUGCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29817 0.69 0.852037
Target:  5'- aGCGGccGCCGcGGCAGacccccggcACGGUGAGagGGCGa -3'
miRNA:   3'- -CGCU--CGGU-CCGUU---------UGCCAUUCg-UCGC- -5'
5165 3' -54.3 NC_001798.1 + 9926 0.69 0.852037
Target:  5'- uGCGAGCCucGGCAAAacauc-GCGGCGg -3'
miRNA:   3'- -CGCUCGGu-CCGUUUgccauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2424 0.69 0.852037
Target:  5'- gGCGuguGGCUGGGCcccGGCGGcuGGCGGCGc -3'
miRNA:   3'- -CGC---UCGGUCCGu--UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 151776 0.69 0.843953
Target:  5'- uUGAGCauccccCAGGCGuGCGG--GGCGGCGg -3'
miRNA:   3'- cGCUCG------GUCCGUuUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 3106 0.69 0.843953
Target:  5'- gGCG-GCCAGGCAcuccACGGccacGCGGCc -3'
miRNA:   3'- -CGCuCGGUCCGUu---UGCCauu-CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 1477 0.69 0.843953
Target:  5'- gGCGcGCCGGGCGccAugGcGUcgcccgcgcccgAGGCGGCGg -3'
miRNA:   3'- -CGCuCGGUCCGU--UugC-CA------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 84050 0.69 0.834831
Target:  5'- cGCGAGCUgcacccgGGGCAuGCGcacaAAGCAGCu -3'
miRNA:   3'- -CGCUCGG-------UCCGUuUGCca--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 28646 0.69 0.832303
Target:  5'- aGCGGGCCGaccGCGAcCGGUuccggcgccgcguGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUc--CGUUuGCCAu------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 6304 0.7 0.800713
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGaCGg -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 27173 0.7 0.800713
Target:  5'- uGCGAGCUcgGGGCcgcgggcGCGGgggGAGgGGCGg -3'
miRNA:   3'- -CGCUCGG--UCCGuu-----UGCCa--UUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 125654 0.7 0.800713
Target:  5'- cGCGGGCgAGGCGggGGCGGcugAGGuCAGgGg -3'
miRNA:   3'- -CGCUCGgUCCGU--UUGCCa--UUC-GUCgC- -5'
5165 3' -54.3 NC_001798.1 + 145804 0.7 0.800713
Target:  5'- cGCGGGC--GGCAGaaacGCGGgcgcGGCGGCGg -3'
miRNA:   3'- -CGCUCGguCCGUU----UGCCau--UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 71568 0.7 0.808817
Target:  5'- aGCGAGCacacgcaCGGGCGgcucugugaGGCGGUcggccugucGGGCGGCGu -3'
miRNA:   3'- -CGCUCG-------GUCCGU---------UUGCCA---------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 49374 0.7 0.80971
Target:  5'- aCGAgGCCAuGGCGcaguuuuuccGCGGUGAGCuGCGg -3'
miRNA:   3'- cGCU-CGGU-CCGUu---------UGCCAUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 72519 0.7 0.80971
Target:  5'- cCGAgGCCauGGGCGAcGCGGUGAGcCAGUa -3'
miRNA:   3'- cGCU-CGG--UCCGUU-UGCCAUUC-GUCGc -5'
5165 3' -54.3 NC_001798.1 + 134986 0.7 0.80971
Target:  5'- uGgGGGCCuGGCccGCGGUGGGC-GCc -3'
miRNA:   3'- -CgCUCGGuCCGuuUGCCAUUCGuCGc -5'
5165 3' -54.3 NC_001798.1 + 3296 0.7 0.80971
Target:  5'- gGCGAcGCCGccgccgacGGC-AACGGggcGGCGGCGg -3'
miRNA:   3'- -CGCU-CGGU--------CCGuUUGCCau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 35280 0.7 0.80971
Target:  5'- cGCGGGCgGGGCu--CGGgcucuccGGCGGCu -3'
miRNA:   3'- -CGCUCGgUCCGuuuGCCau-----UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 6265 0.7 0.800713
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGaCGg -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.