miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 150090 0.72 0.713794
Target:  5'- gGCGAG--GGGCGAGCGcgGGGCGGCGg -3'
miRNA:   3'- -CGCUCggUCCGUUUGCcaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 6356 0.72 0.683183
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUCGc -5'
5165 3' -54.3 NC_001798.1 + 69281 0.72 0.683183
Target:  5'- gGCGGGUCAGGUGAuaGCGGggGGCGcCGg -3'
miRNA:   3'- -CGCUCGGUCCGUU--UGCCauUCGUcGC- -5'
5165 3' -54.3 NC_001798.1 + 12324 0.72 0.683183
Target:  5'- aGCG-GCCGGGCAuaccgggaucgGACGGgucgAGGUGGCu -3'
miRNA:   3'- -CGCuCGGUCCGU-----------UUGCCa---UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 34604 0.72 0.703649
Target:  5'- gGUGGGaCgCGGGCAAA-GGgcGGCGGCGg -3'
miRNA:   3'- -CGCUC-G-GUCCGUUUgCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 130508 0.72 0.713794
Target:  5'- cGCaGGCCAGGCcGAcgaugcCGGUG-GCGGCGa -3'
miRNA:   3'- -CGcUCGGUCCGuUU------GCCAUuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 94278 0.71 0.763248
Target:  5'- gGUGuucGCCGGGCAGuCGGUcGAGgGGCGc -3'
miRNA:   3'- -CGCu--CGGUCCGUUuGCCA-UUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 6400 0.71 0.763248
Target:  5'- gGgGGGCCGGGgGGACGGggGGaCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCgUUUGCCauUC-GUCgC- -5'
5165 3' -54.3 NC_001798.1 + 15280 0.71 0.733858
Target:  5'- cCGGGuuCCGGGCGuGGCGGUGGucGCGGCGa -3'
miRNA:   3'- cGCUC--GGUCCGU-UUGCCAUU--CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 36076 0.71 0.753558
Target:  5'- uGCGGGCgCGGGguaGGugGGUGGGCGGg- -3'
miRNA:   3'- -CGCUCG-GUCCg--UUugCCAUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 144575 0.71 0.753558
Target:  5'- -aGGGCgAGGaCGGGCGGcUGGGUGGCGa -3'
miRNA:   3'- cgCUCGgUCC-GUUUGCC-AUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 43490 0.71 0.742773
Target:  5'- -aGGGCCgccgGGGCAuACgugcgcgcgcgcaGGUAGGCGGCGg -3'
miRNA:   3'- cgCUCGG----UCCGUuUG-------------CCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 92037 0.71 0.733858
Target:  5'- -gGGGCCGcucGGCGAACGGgcGGguGUa -3'
miRNA:   3'- cgCUCGGU---CCGUUUGCCauUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 30941 0.71 0.753558
Target:  5'- cGgGGGUCGGGCGGGgGGcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCaUUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 125654 0.7 0.800713
Target:  5'- cGCGGGCgAGGCGggGGCGGcugAGGuCAGgGg -3'
miRNA:   3'- -CGCUCGgUCCGU--UUGCCa--UUC-GUCgC- -5'
5165 3' -54.3 NC_001798.1 + 36568 0.7 0.79156
Target:  5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3'
miRNA:   3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 36610 0.7 0.79156
Target:  5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3'
miRNA:   3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 41671 0.7 0.79156
Target:  5'- cGCGAGCauGGCGugcccgcaucGACGGUAAaCAGCGu -3'
miRNA:   3'- -CGCUCGguCCGU----------UUGCCAUUcGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 90423 0.7 0.79156
Target:  5'- cGCG-GCCGGGCuugAGGCGGUAccAGCcgaaGGUGa -3'
miRNA:   3'- -CGCuCGGUCCG---UUUGCCAU--UCG----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 109359 0.7 0.79156
Target:  5'- gGCcGGCCuGGCcgccCGGgGAGCAGCGg -3'
miRNA:   3'- -CGcUCGGuCCGuuu-GCCaUUCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.