miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 125704 0.7 0.80971
Target:  5'- cCGAcGUCGGGCGcGCGcGggGGCGGCGa -3'
miRNA:   3'- cGCU-CGGUCCGUuUGC-CauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 41671 0.7 0.79156
Target:  5'- cGCGAGCauGGCGugcccgcaucGACGGUAAaCAGCGu -3'
miRNA:   3'- -CGCUCGguCCGU----------UUGCCAUUcGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 3296 0.7 0.80971
Target:  5'- gGCGAcGCCGccgccgacGGC-AACGGggcGGCGGCGg -3'
miRNA:   3'- -CGCU-CGGU--------CCGuUUGCCau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 145804 0.7 0.800713
Target:  5'- cGCGGGC--GGCAGaaacGCGGgcgcGGCGGCGg -3'
miRNA:   3'- -CGCUCGguCCGUU----UGCCau--UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 71568 0.7 0.808817
Target:  5'- aGCGAGCacacgcaCGGGCGgcucugugaGGCGGUcggccugucGGGCGGCGu -3'
miRNA:   3'- -CGCUCG-------GUCCGU---------UUGCCA---------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 154144 0.7 0.79156
Target:  5'- gGCGGGaCAuGGCGGGCGGcUGGGCucGGCGu -3'
miRNA:   3'- -CGCUCgGU-CCGUUUGCC-AUUCG--UCGC- -5'
5165 3' -54.3 NC_001798.1 + 36526 0.7 0.79156
Target:  5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3'
miRNA:   3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 8796 0.7 0.79156
Target:  5'- aCGGGCgAGGCc-GCGGgguaAAGCGGCa -3'
miRNA:   3'- cGCUCGgUCCGuuUGCCa---UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 8548 0.7 0.79156
Target:  5'- cGUGGGUCGcGGCGAGgGGUGGG-GGCGa -3'
miRNA:   3'- -CGCUCGGU-CCGUUUgCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2697 0.7 0.79156
Target:  5'- aGCGAGUCGGccGCGgcGACGGUGucggccAGCAGgGg -3'
miRNA:   3'- -CGCUCGGUC--CGU--UUGCCAU------UCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 15206 0.7 0.790636
Target:  5'- gGCGAGCCGGGgGGagcguccGCGGguccguguGGguGCGu -3'
miRNA:   3'- -CGCUCGGUCCgUU-------UGCCau------UCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 22266 0.7 0.783194
Target:  5'- cCGcGCCGGGCGcuaaugagaugccgcGCGGgcgGAGCGGCGg -3'
miRNA:   3'- cGCuCGGUCCGUu--------------UGCCa--UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 149994 0.7 0.782258
Target:  5'- cGCGGacGCCgGGGCGAGCGGcccguGGCcGCGg -3'
miRNA:   3'- -CGCU--CGG-UCCGUUUGCCau---UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 36418 0.7 0.782258
Target:  5'- cCGGGCgGGGCGGugGGgcGgggucggggucGCGGCGg -3'
miRNA:   3'- cGCUCGgUCCGUUugCCauU-----------CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 123392 0.7 0.782258
Target:  5'- gGCGAcGCCAGGCccccCGG-GAGCcGCGg -3'
miRNA:   3'- -CGCU-CGGUCCGuuu-GCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 148039 0.7 0.772817
Target:  5'- cGUGGGCgCGGGCGGGgGGgugguGGUAGUGg -3'
miRNA:   3'- -CGCUCG-GUCCGUUUgCCau---UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 88226 0.7 0.772817
Target:  5'- gGUGGGCCAGGCGcuuguUGGUGuacGCGcGCGg -3'
miRNA:   3'- -CGCUCGGUCCGUuu---GCCAUu--CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 43709 0.7 0.772817
Target:  5'- uGCGuGGCCAGGC--GCGGggGGCugaAGCa -3'
miRNA:   3'- -CGC-UCGGUCCGuuUGCCauUCG---UCGc -5'
5165 3' -54.3 NC_001798.1 + 83837 0.7 0.76996
Target:  5'- aCGGGCCGguccccguccgggcGGCGcuGGCGGgcccgAGGCGGCGa -3'
miRNA:   3'- cGCUCGGU--------------CCGU--UUGCCa----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 90423 0.7 0.79156
Target:  5'- cGCG-GCCGGGCuugAGGCGGUAccAGCcgaaGGUGa -3'
miRNA:   3'- -CGCuCGGUCCG---UUUGCCAU--UCG----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.