Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5165 | 3' | -54.3 | NC_001798.1 | + | 8548 | 0.7 | 0.79156 |
Target: 5'- cGUGGGUCGcGGCGAGgGGUGGG-GGCGa -3' miRNA: 3'- -CGCUCGGU-CCGUUUgCCAUUCgUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 36568 | 0.7 | 0.79156 |
Target: 5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3' miRNA: 3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 27173 | 0.7 | 0.800713 |
Target: 5'- uGCGAGCUcgGGGCcgcgggcGCGGgggGAGgGGCGg -3' miRNA: 3'- -CGCUCGG--UCCGuu-----UGCCa--UUCgUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 109359 | 0.7 | 0.79156 |
Target: 5'- gGCcGGCCuGGCcgccCGGgGAGCAGCGg -3' miRNA: 3'- -CGcUCGGuCCGuuu-GCCaUUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 90423 | 0.7 | 0.79156 |
Target: 5'- cGCG-GCCGGGCuugAGGCGGUAccAGCcgaaGGUGa -3' miRNA: 3'- -CGCuCGGUCCG---UUUGCCAU--UCG----UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 36610 | 0.7 | 0.79156 |
Target: 5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3' miRNA: 3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 69476 | 0.69 | 0.827197 |
Target: 5'- cCGGGCCGucgcGGCGAGCGaUGGGCGGgCGc -3' miRNA: 3'- cGCUCGGU----CCGUUUGCcAUUCGUC-GC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 29900 | 0.69 | 0.827197 |
Target: 5'- uGCGGGUUGGggguggucGCGGGCGGUGGGCucgggGGCGg -3' miRNA: 3'- -CGCUCGGUC--------CGUUUGCCAUUCG-----UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 1836 | 0.69 | 0.830608 |
Target: 5'- gGCGGGCCAguccgcggcgcgcacGGCGuugacGACGaugAGGCGGCGg -3' miRNA: 3'- -CGCUCGGU---------------CCGU-----UUGCca-UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 28646 | 0.69 | 0.832303 |
Target: 5'- aGCGGGCCGaccGCGAcCGGUuccggcgccgcguGGCGGCGg -3' miRNA: 3'- -CGCUCGGUc--CGUUuGCCAu------------UCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 84050 | 0.69 | 0.834831 |
Target: 5'- cGCGAGCUgcacccgGGGCAuGCGcacaAAGCAGCu -3' miRNA: 3'- -CGCUCGG-------UCCGUuUGCca--UUCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 1477 | 0.69 | 0.843953 |
Target: 5'- gGCGcGCCGGGCGccAugGcGUcgcccgcgcccgAGGCGGCGg -3' miRNA: 3'- -CGCuCGGUCCGU--UugC-CA------------UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 3106 | 0.69 | 0.843953 |
Target: 5'- gGCG-GCCAGGCAcuccACGGccacGCGGCc -3' miRNA: 3'- -CGCuCGGUCCGUu---UGCCauu-CGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 151776 | 0.69 | 0.843953 |
Target: 5'- uUGAGCauccccCAGGCGuGCGG--GGCGGCGg -3' miRNA: 3'- cGCUCG------GUCCGUuUGCCauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 2424 | 0.69 | 0.852037 |
Target: 5'- gGCGuguGGCUGGGCcccGGCGGcuGGCGGCGc -3' miRNA: 3'- -CGC---UCGGUCCGu--UUGCCauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 9926 | 0.69 | 0.852037 |
Target: 5'- uGCGAGCCucGGCAAAacauc-GCGGCGg -3' miRNA: 3'- -CGCUCGGu-CCGUUUgccauuCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 29817 | 0.69 | 0.852037 |
Target: 5'- aGCGGccGCCGcGGCAGacccccggcACGGUGAGagGGCGa -3' miRNA: 3'- -CGCU--CGGU-CCGUU---------UGCCAUUCg-UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 121696 | 0.69 | 0.858357 |
Target: 5'- uGgGGGCCGcGGCucccgccgccgcGACGG-AGGCGGCGg -3' miRNA: 3'- -CgCUCGGU-CCGu-----------UUGCCaUUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 6584 | 0.69 | 0.81854 |
Target: 5'- aCGGGCCGGGgGGACGGggGGacgGGCc -3' miRNA: 3'- cGCUCGGUCCgUUUGCCauUCg--UCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 6542 | 0.69 | 0.81854 |
Target: 5'- aCGGGCCGGGgGGACGGggGGacgGGCc -3' miRNA: 3'- cGCUCGGUCCgUUUGCCauUCg--UCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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