miRNA display CGI


Results 41 - 60 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 79947 0.72 0.703649
Target:  5'- aGCuGGGCUGGGCGucCGG--AGCGGCGg -3'
miRNA:   3'- -CG-CUCGGUCCGUuuGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 95380 0.72 0.703649
Target:  5'- -aGGGCgGGGC-GGCGGUcgccAGCAGCGu -3'
miRNA:   3'- cgCUCGgUCCGuUUGCCAu---UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 34604 0.72 0.703649
Target:  5'- gGUGGGaCgCGGGCAAA-GGgcGGCGGCGg -3'
miRNA:   3'- -CGCUC-G-GUCCGUUUgCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 18208 0.72 0.703649
Target:  5'- cGCGcAGCCucgccGGgGGACGGUGGGCGGg- -3'
miRNA:   3'- -CGC-UCGGu----CCgUUUGCCAUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 130508 0.72 0.713794
Target:  5'- cGCaGGCCAGGCcGAcgaugcCGGUG-GCGGCGa -3'
miRNA:   3'- -CGcUCGGUCCGuUU------GCCAUuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 150090 0.72 0.713794
Target:  5'- gGCGAG--GGGCGAGCGcgGGGCGGCGg -3'
miRNA:   3'- -CGCUCggUCCGUUUGCcaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 15280 0.71 0.733858
Target:  5'- cCGGGuuCCGGGCGuGGCGGUGGucGCGGCGa -3'
miRNA:   3'- cGCUC--GGUCCGU-UUGCCAUU--CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 92037 0.71 0.733858
Target:  5'- -gGGGCCGcucGGCGAACGGgcGGguGUa -3'
miRNA:   3'- cgCUCGGU---CCGUUUGCCauUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 43490 0.71 0.742773
Target:  5'- -aGGGCCgccgGGGCAuACgugcgcgcgcgcaGGUAGGCGGCGg -3'
miRNA:   3'- cgCUCGG----UCCGUuUG-------------CCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 144575 0.71 0.753558
Target:  5'- -aGGGCgAGGaCGGGCGGcUGGGUGGCGa -3'
miRNA:   3'- cgCUCGgUCC-GUUUGCC-AUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 36076 0.71 0.753558
Target:  5'- uGCGGGCgCGGGguaGGugGGUGGGCGGg- -3'
miRNA:   3'- -CGCUCG-GUCCg--UUugCCAUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 30941 0.71 0.753558
Target:  5'- cGgGGGUCGGGCGGGgGGcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCaUUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 94278 0.71 0.763248
Target:  5'- gGUGuucGCCGGGCAGuCGGUcGAGgGGCGc -3'
miRNA:   3'- -CGCu--CGGUCCGUUuGCCA-UUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 6400 0.71 0.763248
Target:  5'- gGgGGGCCGGGgGGACGGggGGaCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCgUUUGCCauUC-GUCgC- -5'
5165 3' -54.3 NC_001798.1 + 83837 0.7 0.76996
Target:  5'- aCGGGCCGguccccguccgggcGGCGcuGGCGGgcccgAGGCGGCGa -3'
miRNA:   3'- cGCUCGGU--------------CCGU--UUGCCa----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 43709 0.7 0.772817
Target:  5'- uGCGuGGCCAGGC--GCGGggGGCugaAGCa -3'
miRNA:   3'- -CGC-UCGGUCCGuuUGCCauUCG---UCGc -5'
5165 3' -54.3 NC_001798.1 + 88226 0.7 0.772817
Target:  5'- gGUGGGCCAGGCGcuuguUGGUGuacGCGcGCGg -3'
miRNA:   3'- -CGCUCGGUCCGUuu---GCCAUu--CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 148039 0.7 0.772817
Target:  5'- cGUGGGCgCGGGCGGGgGGgugguGGUAGUGg -3'
miRNA:   3'- -CGCUCG-GUCCGUUUgCCau---UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 123392 0.7 0.782258
Target:  5'- gGCGAcGCCAGGCccccCGG-GAGCcGCGg -3'
miRNA:   3'- -CGCU-CGGUCCGuuu-GCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 36418 0.7 0.782258
Target:  5'- cCGGGCgGGGCGGugGGgcGgggucggggucGCGGCGg -3'
miRNA:   3'- cGCUCGgUCCGUUugCCauU-----------CGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.