miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 125704 0.7 0.80971
Target:  5'- cCGAcGUCGGGCGcGCGcGggGGCGGCGa -3'
miRNA:   3'- cGCU-CGGUCCGUuUGC-CauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 134986 0.7 0.80971
Target:  5'- uGgGGGCCuGGCccGCGGUGGGC-GCc -3'
miRNA:   3'- -CgCUCGGuCCGuuUGCCAUUCGuCGc -5'
5165 3' -54.3 NC_001798.1 + 35280 0.7 0.80971
Target:  5'- cGCGGGCgGGGCu--CGGgcucuccGGCGGCu -3'
miRNA:   3'- -CGCUCGgUCCGuuuGCCau-----UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 3296 0.7 0.80971
Target:  5'- gGCGAcGCCGccgccgacGGC-AACGGggcGGCGGCGg -3'
miRNA:   3'- -CGCU-CGGU--------CCGuUUGCCau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 49374 0.7 0.80971
Target:  5'- aCGAgGCCAuGGCGcaguuuuuccGCGGUGAGCuGCGg -3'
miRNA:   3'- cGCU-CGGU-CCGUu---------UGCCAUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 72519 0.7 0.80971
Target:  5'- cCGAgGCCauGGGCGAcGCGGUGAGcCAGUa -3'
miRNA:   3'- cGCU-CGG--UCCGUU-UGCCAUUC-GUCGc -5'
5165 3' -54.3 NC_001798.1 + 27230 0.69 0.81854
Target:  5'- cGCGGGggAGGCGGccGCGGgggAGGCGGCc -3'
miRNA:   3'- -CGCUCggUCCGUU--UGCCa--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 44399 0.69 0.81854
Target:  5'- cGUGGGCCGGgaGCAAugGGgucccGCGGCc -3'
miRNA:   3'- -CGCUCGGUC--CGUUugCCauu--CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 6584 0.69 0.81854
Target:  5'- aCGGGCCGGGgGGACGGggGGacgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCauUCg--UCGc -5'
5165 3' -54.3 NC_001798.1 + 6542 0.69 0.81854
Target:  5'- aCGGGCCGGGgGGACGGggGGacgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCauUCg--UCGc -5'
5165 3' -54.3 NC_001798.1 + 94033 0.69 0.826339
Target:  5'- cGCGAgGCCcuGCAcACGGUGgugaacaacaucaAGCAGCu -3'
miRNA:   3'- -CGCU-CGGucCGUuUGCCAU-------------UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 29900 0.69 0.827197
Target:  5'- uGCGGGUUGGggguggucGCGGGCGGUGGGCucgggGGCGg -3'
miRNA:   3'- -CGCUCGGUC--------CGUUUGCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 69476 0.69 0.827197
Target:  5'- cCGGGCCGucgcGGCGAGCGaUGGGCGGgCGc -3'
miRNA:   3'- cGCUCGGU----CCGUUUGCcAUUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 22402 0.69 0.827197
Target:  5'- gGCGAGCCGGG---GCGc--GGCGGCGu -3'
miRNA:   3'- -CGCUCGGUCCguuUGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 6232 0.69 0.827197
Target:  5'- gGCcGGCCGGGgGGACGGgcGGgGGaCGg -3'
miRNA:   3'- -CGcUCGGUCCgUUUGCCauUCgUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 20356 0.69 0.827197
Target:  5'- gGCGcuGCCGGGCGGguuCGG--GGCGGCa -3'
miRNA:   3'- -CGCu-CGGUCCGUUu--GCCauUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 96031 0.69 0.827197
Target:  5'- gGCGGGgCGGGCGGGCGGgcgacGGGCAu-- -3'
miRNA:   3'- -CGCUCgGUCCGUUUGCCa----UUCGUcgc -5'
5165 3' -54.3 NC_001798.1 + 1836 0.69 0.830608
Target:  5'- gGCGGGCCAguccgcggcgcgcacGGCGuugacGACGaugAGGCGGCGg -3'
miRNA:   3'- -CGCUCGGU---------------CCGU-----UUGCca-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 28646 0.69 0.832303
Target:  5'- aGCGGGCCGaccGCGAcCGGUuccggcgccgcguGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUc--CGUUuGCCAu------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 84050 0.69 0.834831
Target:  5'- cGCGAGCUgcacccgGGGCAuGCGcacaAAGCAGCu -3'
miRNA:   3'- -CGCUCGG-------UCCGUuUGCca--UUCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.