Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5165 | 3' | -54.3 | NC_001798.1 | + | 1477 | 0.69 | 0.843953 |
Target: 5'- gGCGcGCCGGGCGccAugGcGUcgcccgcgcccgAGGCGGCGg -3' miRNA: 3'- -CGCuCGGUCCGU--UugC-CA------------UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 3106 | 0.69 | 0.843953 |
Target: 5'- gGCG-GCCAGGCAcuccACGGccacGCGGCc -3' miRNA: 3'- -CGCuCGGUCCGUu---UGCCauu-CGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 151776 | 0.69 | 0.843953 |
Target: 5'- uUGAGCauccccCAGGCGuGCGG--GGCGGCGg -3' miRNA: 3'- cGCUCG------GUCCGUuUGCCauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 9926 | 0.69 | 0.852037 |
Target: 5'- uGCGAGCCucGGCAAAacauc-GCGGCGg -3' miRNA: 3'- -CGCUCGGu-CCGUUUgccauuCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 29817 | 0.69 | 0.852037 |
Target: 5'- aGCGGccGCCGcGGCAGacccccggcACGGUGAGagGGCGa -3' miRNA: 3'- -CGCU--CGGU-CCGUU---------UGCCAUUCg-UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 2424 | 0.69 | 0.852037 |
Target: 5'- gGCGuguGGCUGGGCcccGGCGGcuGGCGGCGc -3' miRNA: 3'- -CGC---UCGGUCCGu--UUGCCauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 121696 | 0.69 | 0.858357 |
Target: 5'- uGgGGGCCGcGGCucccgccgccgcGACGG-AGGCGGCGg -3' miRNA: 3'- -CgCUCGGU-CCGu-----------UUGCCaUUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 72217 | 0.68 | 0.875033 |
Target: 5'- cGUGAucGCCAGGgGGGCcGUcGAGCAGCu -3' miRNA: 3'- -CGCU--CGGUCCgUUUGcCA-UUCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 153796 | 0.68 | 0.875033 |
Target: 5'- uGCGcGGCgGcGGCGGGgGGcAGGCGGCGg -3' miRNA: 3'- -CGC-UCGgU-CCGUUUgCCaUUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 11248 | 0.68 | 0.875033 |
Target: 5'- uGCgGGGCCgAGGacuGACGGacAGCAGCa -3' miRNA: 3'- -CG-CUCGG-UCCgu-UUGCCauUCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 89684 | 0.68 | 0.875033 |
Target: 5'- cGCGGGCCcGG-AGGCGuaGUAGGCGGgGa -3' miRNA: 3'- -CGCUCGGuCCgUUUGC--CAUUCGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 93310 | 0.68 | 0.875033 |
Target: 5'- cGCGGGCCucguGGGCGccAUGGUGuuCAGCa -3' miRNA: 3'- -CGCUCGG----UCCGUu-UGCCAUucGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 48672 | 0.68 | 0.882259 |
Target: 5'- cCGAGCgCGGG-GGACGGgccgcccgGAGCGGUGg -3' miRNA: 3'- cGCUCG-GUCCgUUUGCCa-------UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 28821 | 0.68 | 0.889256 |
Target: 5'- cGCGGGcCCGGGCcgucGGGCGGUcuaGGGUugaaccGGCGa -3' miRNA: 3'- -CGCUC-GGUCCG----UUUGCCA---UUCG------UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 26352 | 0.68 | 0.889256 |
Target: 5'- cGCGgcGGCCcGGCGGagcugcGCGGgccGCGGCGg -3' miRNA: 3'- -CGC--UCGGuCCGUU------UGCCauuCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 40503 | 0.68 | 0.889256 |
Target: 5'- uGCuGGGCCGGGgGAGgGGcAAGCAGa- -3' miRNA: 3'- -CG-CUCGGUCCgUUUgCCaUUCGUCgc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 88045 | 0.68 | 0.894686 |
Target: 5'- gGCaGGGCCgcuGGGgGGGCGGgcucguccccugGGGCGGCGg -3' miRNA: 3'- -CG-CUCGG---UCCgUUUGCCa-----------UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 29140 | 0.68 | 0.895354 |
Target: 5'- aUGGGCCGGcguucccGCucGCGGUAauuAGCAGCu -3' miRNA: 3'- cGCUCGGUC-------CGuuUGCCAU---UCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 31761 | 0.68 | 0.89602 |
Target: 5'- cUGGGCCGGGCAGGCGcGaccgacGCGcGCGg -3' miRNA: 3'- cGCUCGGUCCGUUUGC-Cauu---CGU-CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 32236 | 0.68 | 0.89602 |
Target: 5'- uGCGGGCgGGGC---UGGUGGG-AGCGu -3' miRNA: 3'- -CGCUCGgUCCGuuuGCCAUUCgUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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