miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 26352 0.68 0.889256
Target:  5'- cGCGgcGGCCcGGCGGagcugcGCGGgccGCGGCGg -3'
miRNA:   3'- -CGC--UCGGuCCGUU------UGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 40503 0.68 0.889256
Target:  5'- uGCuGGGCCGGGgGAGgGGcAAGCAGa- -3'
miRNA:   3'- -CG-CUCGGUCCgUUUgCCaUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 48672 0.68 0.882259
Target:  5'- cCGAGCgCGGG-GGACGGgccgcccgGAGCGGUGg -3'
miRNA:   3'- cGCUCG-GUCCgUUUGCCa-------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 11248 0.68 0.875033
Target:  5'- uGCgGGGCCgAGGacuGACGGacAGCAGCa -3'
miRNA:   3'- -CG-CUCGG-UCCgu-UUGCCauUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 72217 0.68 0.875033
Target:  5'- cGUGAucGCCAGGgGGGCcGUcGAGCAGCu -3'
miRNA:   3'- -CGCU--CGGUCCgUUUGcCA-UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 89684 0.68 0.875033
Target:  5'- cGCGGGCCcGG-AGGCGuaGUAGGCGGgGa -3'
miRNA:   3'- -CGCUCGGuCCgUUUGC--CAUUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 93310 0.68 0.875033
Target:  5'- cGCGGGCCucguGGGCGccAUGGUGuuCAGCa -3'
miRNA:   3'- -CGCUCGG----UCCGUu-UGCCAUucGUCGc -5'
5165 3' -54.3 NC_001798.1 + 153796 0.68 0.875033
Target:  5'- uGCGcGGCgGcGGCGGGgGGcAGGCGGCGg -3'
miRNA:   3'- -CGC-UCGgU-CCGUUUgCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 121696 0.69 0.858357
Target:  5'- uGgGGGCCGcGGCucccgccgccgcGACGG-AGGCGGCGg -3'
miRNA:   3'- -CgCUCGGU-CCGu-----------UUGCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2424 0.69 0.852037
Target:  5'- gGCGuguGGCUGGGCcccGGCGGcuGGCGGCGc -3'
miRNA:   3'- -CGC---UCGGUCCGu--UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 9926 0.69 0.852037
Target:  5'- uGCGAGCCucGGCAAAacauc-GCGGCGg -3'
miRNA:   3'- -CGCUCGGu-CCGUUUgccauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29817 0.69 0.852037
Target:  5'- aGCGGccGCCGcGGCAGacccccggcACGGUGAGagGGCGa -3'
miRNA:   3'- -CGCU--CGGU-CCGUU---------UGCCAUUCg-UCGC- -5'
5165 3' -54.3 NC_001798.1 + 151776 0.69 0.843953
Target:  5'- uUGAGCauccccCAGGCGuGCGG--GGCGGCGg -3'
miRNA:   3'- cGCUCG------GUCCGUuUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 3106 0.69 0.843953
Target:  5'- gGCG-GCCAGGCAcuccACGGccacGCGGCc -3'
miRNA:   3'- -CGCuCGGUCCGUu---UGCCauu-CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 1477 0.69 0.843953
Target:  5'- gGCGcGCCGGGCGccAugGcGUcgcccgcgcccgAGGCGGCGg -3'
miRNA:   3'- -CGCuCGGUCCGU--UugC-CA------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 84050 0.69 0.834831
Target:  5'- cGCGAGCUgcacccgGGGCAuGCGcacaAAGCAGCu -3'
miRNA:   3'- -CGCUCGG-------UCCGUuUGCca--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 28646 0.69 0.832303
Target:  5'- aGCGGGCCGaccGCGAcCGGUuccggcgccgcguGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUc--CGUUuGCCAu------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1836 0.69 0.830608
Target:  5'- gGCGGGCCAguccgcggcgcgcacGGCGuugacGACGaugAGGCGGCGg -3'
miRNA:   3'- -CGCUCGGU---------------CCGU-----UUGCca-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29900 0.69 0.827197
Target:  5'- uGCGGGUUGGggguggucGCGGGCGGUGGGCucgggGGCGg -3'
miRNA:   3'- -CGCUCGGUC--------CGUUUGCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 96031 0.69 0.827197
Target:  5'- gGCGGGgCGGGCGGGCGGgcgacGGGCAu-- -3'
miRNA:   3'- -CGCUCgGUCCGUUUGCCa----UUCGUcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.