miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 15040 0.67 0.926229
Target:  5'- cGgGAGCgugGGGCGGAUGGgcccgGGGCGcGCGg -3'
miRNA:   3'- -CgCUCGg--UCCGUUUGCCa----UUCGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 15206 0.7 0.790636
Target:  5'- gGCGAGCCGGGgGGagcguccGCGGguccguguGGguGCGu -3'
miRNA:   3'- -CGCUCGGUCCgUU-------UGCCau------UCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 15280 0.71 0.733858
Target:  5'- cCGGGuuCCGGGCGuGGCGGUGGucGCGGCGa -3'
miRNA:   3'- cGCUC--GGUCCGU-UUGCCAUU--CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 15346 0.66 0.941412
Target:  5'- aGCGGG--GGGCGAgGCGGUGAGgGGgGa -3'
miRNA:   3'- -CGCUCggUCCGUU-UGCCAUUCgUCgC- -5'
5165 3' -54.3 NC_001798.1 + 16050 0.66 0.954409
Target:  5'- aGCGAcGCguGGUAGGuCGcuggGGGCGGCGg -3'
miRNA:   3'- -CGCU-CGguCCGUUU-GCca--UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 18208 0.72 0.703649
Target:  5'- cGCGcAGCCucgccGGgGGACGGUGGGCGGg- -3'
miRNA:   3'- -CGC-UCGGu----CCgUUUGCCAUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 20356 0.69 0.827197
Target:  5'- gGCGcuGCCGGGCGGguuCGG--GGCGGCa -3'
miRNA:   3'- -CGCu-CGGUCCGUUu--GCCauUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 22266 0.7 0.783194
Target:  5'- cCGcGCCGGGCGcuaaugagaugccgcGCGGgcgGAGCGGCGg -3'
miRNA:   3'- cGCuCGGUCCGUu--------------UGCCa--UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 22402 0.69 0.827197
Target:  5'- gGCGAGCCGGG---GCGc--GGCGGCGu -3'
miRNA:   3'- -CGCUCGGUCCguuUGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 22680 0.66 0.945984
Target:  5'- cCG-GUCggAGGCGAuguCGGcgGAGCAGCGg -3'
miRNA:   3'- cGCuCGG--UCCGUUu--GCCa-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 23659 0.67 0.902547
Target:  5'- aGCGccGCCGGGCccgcgcGGCGGUGgccGGCcGCGa -3'
miRNA:   3'- -CGCu-CGGUCCGu-----UUGCCAU---UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 23952 0.73 0.621031
Target:  5'- cCGAGCUGGGCGAcGCGGc--GCAGCa -3'
miRNA:   3'- cGCUCGGUCCGUU-UGCCauuCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 26352 0.68 0.889256
Target:  5'- cGCGgcGGCCcGGCGGagcugcGCGGgccGCGGCGg -3'
miRNA:   3'- -CGC--UCGGuCCGUU------UGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 26495 0.77 0.415077
Target:  5'- cGCGGGCCGcGCGggGACGGUGcuggccgcggcgGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUcCGU--UUGCCAU------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 26807 0.75 0.538887
Target:  5'- cGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 26852 0.75 0.538887
Target:  5'- cGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 26882 0.74 0.569386
Target:  5'- nGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 26927 0.76 0.489409
Target:  5'- cGgGGGUCGGGCGGGCGGggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa---UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 26971 0.75 0.538887
Target:  5'- cGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 27016 0.75 0.499144
Target:  5'- cGgGGGUCGGGCGGGCGGgggucgggcGGGCGGCa -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa--------UUCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.