miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 27173 0.7 0.800713
Target:  5'- uGCGAGCUcgGGGCcgcgggcGCGGgggGAGgGGCGg -3'
miRNA:   3'- -CGCUCGG--UCCGuu-----UGCCa--UUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 27230 0.69 0.81854
Target:  5'- cGCGGGggAGGCGGccGCGGgggAGGCGGCc -3'
miRNA:   3'- -CGCUCggUCCGUU--UGCCa--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 27302 0.67 0.931535
Target:  5'- cGCGAGCUcGGCGGGauggaggggaGGgaggGGGUGGCGg -3'
miRNA:   3'- -CGCUCGGuCCGUUUg---------CCa---UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 27527 0.67 0.914877
Target:  5'- cGCGGGa-AGGCAGccccgcggcgcGCGGggggagGGGCGGCGc -3'
miRNA:   3'- -CGCUCggUCCGUU-----------UGCCa-----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 27796 0.66 0.954409
Target:  5'- gGUGAguucGCUAGGCAAgcACGGacuGGCGGUu -3'
miRNA:   3'- -CGCU----CGGUCCGUU--UGCCau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 28646 0.69 0.832303
Target:  5'- aGCGGGCCGaccGCGAcCGGUuccggcgccgcguGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUc--CGUUuGCCAu------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 28821 0.68 0.889256
Target:  5'- cGCGGGcCCGGGCcgucGGGCGGUcuaGGGUugaaccGGCGa -3'
miRNA:   3'- -CGCUC-GGUCCG----UUUGCCA---UUCG------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 29140 0.68 0.895354
Target:  5'- aUGGGCCGGcguucccGCucGCGGUAauuAGCAGCu -3'
miRNA:   3'- cGCUCGGUC-------CGuuUGCCAU---UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 29632 0.66 0.945984
Target:  5'- uCGGGCCGcauucgcaccccGGCAcugcgagcGACGG--AGCGGCGg -3'
miRNA:   3'- cGCUCGGU------------CCGU--------UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29817 0.69 0.852037
Target:  5'- aGCGGccGCCGcGGCAGacccccggcACGGUGAGagGGCGa -3'
miRNA:   3'- -CGCU--CGGU-CCGUU---------UGCCAUUCg-UCGC- -5'
5165 3' -54.3 NC_001798.1 + 29900 0.69 0.827197
Target:  5'- uGCGGGUUGGggguggucGCGGGCGGUGGGCucgggGGCGg -3'
miRNA:   3'- -CGCUCGGUC--------CGUUUGCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 30941 0.71 0.753558
Target:  5'- cGgGGGUCGGGCGGGgGGcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCaUUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 30974 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 31007 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 31040 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 31348 0.66 0.939993
Target:  5'- gGCGcGCgCAGGCGcGGCGgGUGggcgaagacgccgcGGCGGCGg -3'
miRNA:   3'- -CGCuCG-GUCCGU-UUGC-CAU--------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 31761 0.68 0.89602
Target:  5'- cUGGGCCGGGCAGGCGcGaccgacGCGcGCGg -3'
miRNA:   3'- cGCUCGGUCCGUUUGC-Cauu---CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 32236 0.68 0.89602
Target:  5'- uGCGGGCgGGGC---UGGUGGG-AGCGu -3'
miRNA:   3'- -CGCUCGgUCCGuuuGCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 34559 0.66 0.936596
Target:  5'- -gGAGCCugggucccccGGCGGACGGcucacGCGGCGc -3'
miRNA:   3'- cgCUCGGu---------CCGUUUGCCauu--CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 34604 0.72 0.703649
Target:  5'- gGUGGGaCgCGGGCAAA-GGgcGGCGGCGg -3'
miRNA:   3'- -CGCUC-G-GUCCGUUUgCCauUCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.