miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 34736 0.67 0.902547
Target:  5'- -aGGGUCGGGCccggGAGCGG--GGCGGCc -3'
miRNA:   3'- cgCUCGGUCCG----UUUGCCauUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 34958 0.67 0.926229
Target:  5'- cGCGGcGCCGGaGgGGGCGGccgccGAGguGCGg -3'
miRNA:   3'- -CGCU-CGGUC-CgUUUGCCa----UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 35280 0.7 0.80971
Target:  5'- cGCGGGCgGGGCu--CGGgcucuccGGCGGCu -3'
miRNA:   3'- -CGCUCGgUCCGuuuGCCau-----UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 36076 0.71 0.753558
Target:  5'- uGCGGGCgCGGGguaGGugGGUGGGCGGg- -3'
miRNA:   3'- -CGCUCG-GUCCg--UUugCCAUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 36418 0.7 0.782258
Target:  5'- cCGGGCgGGGCGGugGGgcGgggucggggucGCGGCGg -3'
miRNA:   3'- cGCUCGgUCCGUUugCCauU-----------CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 36526 0.7 0.79156
Target:  5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3'
miRNA:   3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 36568 0.7 0.79156
Target:  5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3'
miRNA:   3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 36610 0.7 0.79156
Target:  5'- cGCGgcGGCCGGGCGGG-GGcgcGCGGCGg -3'
miRNA:   3'- -CGC--UCGGUCCGUUUgCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 37187 0.74 0.548997
Target:  5'- gGCGcGCCAGGCGccgcgccgaacGACGGgc-GCGGCGc -3'
miRNA:   3'- -CGCuCGGUCCGU-----------UUGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 38225 0.67 0.91128
Target:  5'- cGCGcGGCCAGGCAcGCGGgguccguuuuggucgUGuGCAGgGc -3'
miRNA:   3'- -CGC-UCGGUCCGUuUGCC---------------AUuCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 40503 0.68 0.889256
Target:  5'- uGCuGGGCCGGGgGAGgGGcAAGCAGa- -3'
miRNA:   3'- -CG-CUCGGUCCgUUUgCCaUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 41671 0.7 0.79156
Target:  5'- cGCGAGCauGGCGugcccgcaucGACGGUAAaCAGCGu -3'
miRNA:   3'- -CGCUCGguCCGU----------UUGCCAUUcGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 42477 0.67 0.918962
Target:  5'- aGgGAGCCgugcacaacguacgGGGCGGGgacCGGUAGGCAcacGCGc -3'
miRNA:   3'- -CgCUCGG--------------UCCGUUU---GCCAUUCGU---CGC- -5'
5165 3' -54.3 NC_001798.1 + 43490 0.71 0.742773
Target:  5'- -aGGGCCgccgGGGCAuACgugcgcgcgcgcaGGUAGGCGGCGg -3'
miRNA:   3'- cgCUCGG----UCCGUuUG-------------CCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 43709 0.7 0.772817
Target:  5'- uGCGuGGCCAGGC--GCGGggGGCugaAGCa -3'
miRNA:   3'- -CGC-UCGGUCCGuuUGCCauUCG---UCGc -5'
5165 3' -54.3 NC_001798.1 + 43743 0.66 0.951981
Target:  5'- aGUGGGCCAGGUAGauGuacguaaugaauuccCGGUcggacacgcgcAGGCAGCu -3'
miRNA:   3'- -CGCUCGGUCCGUU--U---------------GCCA-----------UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 44399 0.69 0.81854
Target:  5'- cGUGGGCCGGgaGCAAugGGgucccGCGGCc -3'
miRNA:   3'- -CGCUCGGUC--CGUUugCCauu--CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 48672 0.68 0.882259
Target:  5'- cCGAGCgCGGG-GGACGGgccgcccgGAGCGGUGg -3'
miRNA:   3'- cGCUCG-GUCCgUUUGCCa-------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 49374 0.7 0.80971
Target:  5'- aCGAgGCCAuGGCGcaguuuuuccGCGGUGAGCuGCGg -3'
miRNA:   3'- cGCU-CGGU-CCGUu---------UGCCAUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 51332 0.67 0.914877
Target:  5'- uUGGGgCGGGUggGCGGUucGCGGg- -3'
miRNA:   3'- cGCUCgGUCCGuuUGCCAuuCGUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.