Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5165 | 3' | -54.3 | NC_001798.1 | + | 51479 | 0.66 | 0.945984 |
Target: 5'- cGCGuGUCGGGCccgGAGCuGcAGGCGGCa -3' miRNA: 3'- -CGCuCGGUCCG---UUUGcCaUUCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 53924 | 0.67 | 0.914877 |
Target: 5'- cGCGGGCCcagcGGCAccACGGgcucgauGCAGUGc -3' miRNA: 3'- -CGCUCGGu---CCGUu-UGCCauu----CGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 54020 | 0.67 | 0.931535 |
Target: 5'- uGgGAGaCC-GGCAAGCGc--AGCGGCGg -3' miRNA: 3'- -CgCUC-GGuCCGUUUGCcauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 57389 | 0.74 | 0.589957 |
Target: 5'- cGCGAGCCguaccGGGCcAGCGGgucGUGGCGg -3' miRNA: 3'- -CGCUCGG-----UCCGuUUGCCauuCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 58984 | 0.76 | 0.479764 |
Target: 5'- gGCG-GCCGGGCGAACGcGggGGgGGCGc -3' miRNA: 3'- -CGCuCGGUCCGUUUGC-CauUCgUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 59462 | 0.66 | 0.954409 |
Target: 5'- cGCGuGcCCGGGC--GCGGUGAGgcguuCGGCc -3' miRNA: 3'- -CGCuC-GGUCCGuuUGCCAUUC-----GUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 60746 | 0.66 | 0.950315 |
Target: 5'- aGCGAGUCcaaaAGGCucguGCG--AAGCGGCGc -3' miRNA: 3'- -CGCUCGG----UCCGuu--UGCcaUUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 64141 | 0.66 | 0.950315 |
Target: 5'- aGgGGGUCGGuGCucGCGGggGAGaCGGCGg -3' miRNA: 3'- -CgCUCGGUC-CGuuUGCCa-UUC-GUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 64723 | 0.73 | 0.621031 |
Target: 5'- cUGGGCCgAGGC-GGCGGUGGGCAugaGCGc -3' miRNA: 3'- cGCUCGG-UCCGuUUGCCAUUCGU---CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 66367 | 0.67 | 0.926229 |
Target: 5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3' miRNA: 3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 66621 | 0.67 | 0.926229 |
Target: 5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3' miRNA: 3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 67702 | 0.72 | 0.693443 |
Target: 5'- gGCGGGCCcguGGgAGGCGGggUGGGCGGUa -3' miRNA: 3'- -CGCUCGGu--CCgUUUGCC--AUUCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 68471 | 0.68 | 0.89602 |
Target: 5'- uGCGAGCuCGcGGCcgGGACGGcGAGCGGa- -3' miRNA: 3'- -CGCUCG-GU-CCG--UUUGCCaUUCGUCgc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 69182 | 0.79 | 0.340275 |
Target: 5'- gGCGGGCCAGGUggGggagguCGGUGGGguGCc -3' miRNA: 3'- -CGCUCGGUCCGuuU------GCCAUUCguCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 69281 | 0.72 | 0.683183 |
Target: 5'- gGCGGGUCAGGUGAuaGCGGggGGCGcCGg -3' miRNA: 3'- -CGCUCGGUCCGUU--UGCCauUCGUcGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 69476 | 0.69 | 0.827197 |
Target: 5'- cCGGGCCGucgcGGCGAGCGaUGGGCGGgCGc -3' miRNA: 3'- cGCUCGGU----CCGUUUGCcAUUCGUC-GC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 70228 | 0.74 | 0.579652 |
Target: 5'- aGCGAGCCggcGGGCAGcGCGGacGAGcCGGCGu -3' miRNA: 3'- -CGCUCGG---UCCGUU-UGCCa-UUC-GUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 70296 | 0.66 | 0.945984 |
Target: 5'- gGCGuuucuguuGUCGGGCGcGGCGGUcGGCccGGCGg -3' miRNA: 3'- -CGCu-------CGGUCCGU-UUGCCAuUCG--UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 71568 | 0.7 | 0.808817 |
Target: 5'- aGCGAGCacacgcaCGGGCGgcucugugaGGCGGUcggccugucGGGCGGCGu -3' miRNA: 3'- -CGCUCG-------GUCCGU---------UUGCCA---------UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 72217 | 0.68 | 0.875033 |
Target: 5'- cGUGAucGCCAGGgGGGCcGUcGAGCAGCu -3' miRNA: 3'- -CGCU--CGGUCCgUUUGcCA-UUCGUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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