miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 146423 0.78 0.380598
Target:  5'- gGCGAGCCGGGCAGaguGCGGagcccccgGAGCccGCGg -3'
miRNA:   3'- -CGCUCGGUCCGUU---UGCCa-------UUCGu-CGC- -5'
5165 3' -54.3 NC_001798.1 + 146092 0.76 0.442159
Target:  5'- gGCGAGgCGGGCGGGCgaaggaagggggGGUGguGGCGGCGg -3'
miRNA:   3'- -CGCUCgGUCCGUUUG------------CCAU--UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 146027 0.68 0.89602
Target:  5'- --cAGCCaAGGC--GCGGUGGGgGGCGu -3'
miRNA:   3'- cgcUCGG-UCCGuuUGCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 145804 0.7 0.800713
Target:  5'- cGCGGGC--GGCAGaaacGCGGgcgcGGCGGCGg -3'
miRNA:   3'- -CGCUCGguCCGUU----UGCCau--UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 144575 0.71 0.753558
Target:  5'- -aGGGCgAGGaCGGGCGGcUGGGUGGCGa -3'
miRNA:   3'- cgCUCGgUCC-GUUUGCC-AUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 135257 0.66 0.954409
Target:  5'- gGCGGGCCuggaaAGGCuGGACGcgcuGGUGGCGg -3'
miRNA:   3'- -CGCUCGG-----UCCG-UUUGCcau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 134986 0.7 0.80971
Target:  5'- uGgGGGCCuGGCccGCGGUGGGC-GCc -3'
miRNA:   3'- -CgCUCGGuCCGuuUGCCAUUCGuCGc -5'
5165 3' -54.3 NC_001798.1 + 130909 0.75 0.508964
Target:  5'- gGUGGGCCAgcuGGCugauGCGGUGGGcCAGCa -3'
miRNA:   3'- -CGCUCGGU---CCGuu--UGCCAUUC-GUCGc -5'
5165 3' -54.3 NC_001798.1 + 130508 0.72 0.713794
Target:  5'- cGCaGGCCAGGCcGAcgaugcCGGUG-GCGGCGa -3'
miRNA:   3'- -CGcUCGGUCCGuUU------GCCAUuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 126129 0.67 0.914877
Target:  5'- gGCGA-CCuGGCGGACGGauggaUGAGUccgGGCGa -3'
miRNA:   3'- -CGCUcGGuCCGUUUGCC-----AUUCG---UCGC- -5'
5165 3' -54.3 NC_001798.1 + 125704 0.7 0.80971
Target:  5'- cCGAcGUCGGGCGcGCGcGggGGCGGCGa -3'
miRNA:   3'- cGCU-CGGUCCGUuUGC-CauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 125654 0.7 0.800713
Target:  5'- cGCGGGCgAGGCGggGGCGGcugAGGuCAGgGg -3'
miRNA:   3'- -CGCUCGgUCCGU--UUGCCa--UUC-GUCgC- -5'
5165 3' -54.3 NC_001798.1 + 124327 0.66 0.951981
Target:  5'- cGUGGGCCGGGaCGGcGCGGaAAGCgucauccgcccgaccAGCGc -3'
miRNA:   3'- -CGCUCGGUCC-GUU-UGCCaUUCG---------------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 123392 0.7 0.782258
Target:  5'- gGCGAcGCCAGGCccccCGG-GAGCcGCGg -3'
miRNA:   3'- -CGCU-CGGUCCGuuu-GCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 122821 0.73 0.610654
Target:  5'- gGCG-GCCAGG---GCGGUcggGGGCGGCGg -3'
miRNA:   3'- -CGCuCGGUCCguuUGCCA---UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 121696 0.69 0.858357
Target:  5'- uGgGGGCCGcGGCucccgccgccgcGACGG-AGGCGGCGg -3'
miRNA:   3'- -CgCUCGGU-CCGu-----------UUGCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 115709 0.68 0.89602
Target:  5'- cGCGGGCguGGCcGACGucGAGCuucccGGCGg -3'
miRNA:   3'- -CGCUCGguCCGuUUGCcaUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 113634 0.7 0.79156
Target:  5'- uGCGcGGCCGGcGCcgccauGugGGUGgcGGCGGCGg -3'
miRNA:   3'- -CGC-UCGGUC-CGu-----UugCCAU--UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 113324 0.67 0.908833
Target:  5'- cGCGGGCauguauuaCGGGUggaccGGACGGgcGGUGGCGc -3'
miRNA:   3'- -CGCUCG--------GUCCG-----UUUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 113115 0.66 0.941412
Target:  5'- cGCGAGCU-GGUAGACG--AGGCcGCGu -3'
miRNA:   3'- -CGCUCGGuCCGUUUGCcaUUCGuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.