miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 112439 0.66 0.94327
Target:  5'- gGCGAGCCacgGGGCGGACuuGGgggggggaauagugGGGUGGUGg -3'
miRNA:   3'- -CGCUCGG---UCCGUUUG--CCa-------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 111884 0.68 0.89602
Target:  5'- aGCGAGCuCGGGagc-CGGggGAGguGCGc -3'
miRNA:   3'- -CGCUCG-GUCCguuuGCCa-UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 111105 0.66 0.95598
Target:  5'- -gGGGUCAGGCGuuGCGaGUccacaaagcgcagcaGGGCGGCGc -3'
miRNA:   3'- cgCUCGGUCCGUu-UGC-CA---------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 110992 0.67 0.902547
Target:  5'- cGCccGUCAGGCGcGCGGUAugcguGGCcGCGg -3'
miRNA:   3'- -CGcuCGGUCCGUuUGCCAU-----UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 110885 0.66 0.936596
Target:  5'- nGCGu-CCAGGUAcccGGCGGUucGCGuGCGg -3'
miRNA:   3'- -CGCucGGUCCGU---UUGCCAuuCGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 110860 1.11 0.00314
Target:  5'- cGCGAGCCAGGCAAACGGUAAGCAGCGc -3'
miRNA:   3'- -CGCUCGGUCCGUUUGCCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 109359 0.7 0.79156
Target:  5'- gGCcGGCCuGGCcgccCGGgGAGCAGCGg -3'
miRNA:   3'- -CGcUCGGuCCGuuu-GCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 107418 0.66 0.941412
Target:  5'- -gGGGCC-GGCuGACGGgggucgccGCGGCGa -3'
miRNA:   3'- cgCUCGGuCCGuUUGCCauu-----CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 106694 0.66 0.941412
Target:  5'- uGCGAG-CGGGCcuaccGACGGccgcGCGGCGu -3'
miRNA:   3'- -CGCUCgGUCCGu----UUGCCauu-CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 106210 0.75 0.518865
Target:  5'- aCGAGCCGGGuCAcGCGGcUGAcgcGCAGCGu -3'
miRNA:   3'- cGCUCGGUCC-GUuUGCC-AUU---CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 106111 0.77 0.415077
Target:  5'- cGCGAccGCCGGGUcuGCGGUuccGGCGGCa -3'
miRNA:   3'- -CGCU--CGGUCCGuuUGCCAu--UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 105189 0.72 0.693443
Target:  5'- cGCGgcGGCgGGGCccGCGGUGGGCgacGGCGc -3'
miRNA:   3'- -CGC--UCGgUCCGuuUGCCAUUCG---UCGC- -5'
5165 3' -54.3 NC_001798.1 + 102540 0.74 0.568362
Target:  5'- cGCG-GCC-GGCAGgccgcacGCGGUcAGCGGCGg -3'
miRNA:   3'- -CGCuCGGuCCGUU-------UGCCAuUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 97756 0.67 0.920676
Target:  5'- uGCGGGUCAGcGUccACGGcGAGguGCu -3'
miRNA:   3'- -CGCUCGGUC-CGuuUGCCaUUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 97636 0.66 0.945984
Target:  5'- cGCGGGCCGccGCGGACGuGcggGAGCgccGGCGg -3'
miRNA:   3'- -CGCUCGGUc-CGUUUGC-Ca--UUCG---UCGC- -5'
5165 3' -54.3 NC_001798.1 + 97565 0.67 0.926229
Target:  5'- cGCGAGCgAGG---ACGGgGAGC-GCGg -3'
miRNA:   3'- -CGCUCGgUCCguuUGCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 96958 0.66 0.945089
Target:  5'- uGCuGGaCCAGGCGcuggcgcggaccGCGGcGGGCGGCGg -3'
miRNA:   3'- -CGcUC-GGUCCGUu-----------UGCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 96031 0.69 0.827197
Target:  5'- gGCGGGgCGGGCGGGCGGgcgacGGGCAu-- -3'
miRNA:   3'- -CGCUCgGUCCGUUUGCCa----UUCGUcgc -5'
5165 3' -54.3 NC_001798.1 + 95380 0.72 0.703649
Target:  5'- -aGGGCgGGGC-GGCGGUcgccAGCAGCGu -3'
miRNA:   3'- cgCUCGgUCCGuUUGCCAu---UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 94278 0.71 0.763248
Target:  5'- gGUGuucGCCGGGCAGuCGGUcGAGgGGCGc -3'
miRNA:   3'- -CGCu--CGGUCCGUUuGCCA-UUCgUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.