miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 94033 0.69 0.826339
Target:  5'- cGCGAgGCCcuGCAcACGGUGgugaacaacaucaAGCAGCu -3'
miRNA:   3'- -CGCU-CGGucCGUuUGCCAU-------------UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 93310 0.68 0.875033
Target:  5'- cGCGGGCCucguGGGCGccAUGGUGuuCAGCa -3'
miRNA:   3'- -CGCUCGG----UCCGUu-UGCCAUucGUCGc -5'
5165 3' -54.3 NC_001798.1 + 93117 0.81 0.269198
Target:  5'- -aGGGCCcGGCGGGCGGguuUGAGCAGCGc -3'
miRNA:   3'- cgCUCGGuCCGUUUGCC---AUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 92037 0.71 0.733858
Target:  5'- -gGGGCCGcucGGCGAACGGgcGGguGUa -3'
miRNA:   3'- cgCUCGGU---CCGUUUGCCauUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 90423 0.7 0.79156
Target:  5'- cGCG-GCCGGGCuugAGGCGGUAccAGCcgaaGGUGa -3'
miRNA:   3'- -CGCuCGGUCCG---UUUGCCAU--UCG----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 89684 0.68 0.875033
Target:  5'- cGCGGGCCcGG-AGGCGuaGUAGGCGGgGa -3'
miRNA:   3'- -CGCUCGGuCCgUUUGC--CAUUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 88226 0.7 0.772817
Target:  5'- gGUGGGCCAGGCGcuuguUGGUGuacGCGcGCGg -3'
miRNA:   3'- -CGCUCGGUCCGUuu---GCCAUu--CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 88045 0.68 0.894686
Target:  5'- gGCaGGGCCgcuGGGgGGGCGGgcucguccccugGGGCGGCGg -3'
miRNA:   3'- -CG-CUCGG---UCCgUUUGCCa-----------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 84050 0.69 0.834831
Target:  5'- cGCGAGCUgcacccgGGGCAuGCGcacaAAGCAGCu -3'
miRNA:   3'- -CGCUCGG-------UCCGUuUGCca--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 83837 0.7 0.76996
Target:  5'- aCGGGCCGguccccguccgggcGGCGcuGGCGGgcccgAGGCGGCGa -3'
miRNA:   3'- cGCUCGGU--------------CCGU--UUGCCa----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 79947 0.72 0.703649
Target:  5'- aGCuGGGCUGGGCGucCGG--AGCGGCGg -3'
miRNA:   3'- -CG-CUCGGUCCGUuuGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 77686 0.67 0.908833
Target:  5'- gGCGGcCCAGcGCGccCGGggcAGCAGCGa -3'
miRNA:   3'- -CGCUcGGUC-CGUuuGCCau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 75122 0.66 0.945984
Target:  5'- cGC-AGuCCGGGCA---GGgcGGCGGCGa -3'
miRNA:   3'- -CGcUC-GGUCCGUuugCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 73835 0.67 0.931535
Target:  5'- -gGAGCCGGGgGGGuCGGUucguGCAuGCGc -3'
miRNA:   3'- cgCUCGGUCCgUUU-GCCAuu--CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 72519 0.7 0.80971
Target:  5'- cCGAgGCCauGGGCGAcGCGGUGAGcCAGUa -3'
miRNA:   3'- cGCU-CGG--UCCGUU-UGCCAUUC-GUCGc -5'
5165 3' -54.3 NC_001798.1 + 72217 0.68 0.875033
Target:  5'- cGUGAucGCCAGGgGGGCcGUcGAGCAGCu -3'
miRNA:   3'- -CGCU--CGGUCCgUUUGcCA-UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 71568 0.7 0.808817
Target:  5'- aGCGAGCacacgcaCGGGCGgcucugugaGGCGGUcggccugucGGGCGGCGu -3'
miRNA:   3'- -CGCUCG-------GUCCGU---------UUGCCA---------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 70296 0.66 0.945984
Target:  5'- gGCGuuucuguuGUCGGGCGcGGCGGUcGGCccGGCGg -3'
miRNA:   3'- -CGCu-------CGGUCCGU-UUGCCAuUCG--UCGC- -5'
5165 3' -54.3 NC_001798.1 + 70228 0.74 0.579652
Target:  5'- aGCGAGCCggcGGGCAGcGCGGacGAGcCGGCGu -3'
miRNA:   3'- -CGCUCGG---UCCGUU-UGCCa-UUC-GUCGC- -5'
5165 3' -54.3 NC_001798.1 + 69476 0.69 0.827197
Target:  5'- cCGGGCCGucgcGGCGAGCGaUGGGCGGgCGc -3'
miRNA:   3'- cGCUCGGU----CCGUUUGCcAUUCGUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.